These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [AATCGATATGAAAAATACTGTTGCAAGCTATGATTGATCTTTAAACGTATTGCTCGATCATTAGGAATTTAAGAAACTCGAGGTTTTGCATCGAAGCGGAAGCTTTTTCAAGAATTGTAAGATTCTCGATCAGTAATTTAAAATTAGTTAACTTTTTCTTCGTAAATTTTGTTACGATAATTTAGAGAACATTTTTAAAAAAGTAATTTAATTTTTAAAAAATATTCTAAAGATATTTATTCGTTACAAGTTGGAATTGTCCTTGGAAACAGCAAGTTATGTATTATAATATAGCTTAAGCTATGCCGTGCCTGGCCGTATATTCGAAGATATATGATCCATGAATTTCTGAGAATTGGCCAACATTATCTGACTTACTGTGCCGTGCACGCGTCAAGGGTGAAAGTGAAAAATAAATAGTGTTGCGAATAAGACAGGACAGCAGCTACAATGCTACAAAAATAATATACAGAATTTATTTTCCACTAAA] [+] EMBL BI510947 [AATCGATATGAAAAATACTGTTGCAAGCTATGATTGATCTTTAAACGTATTGCTCGATCATTAGGAATTTAAGAAACTCGAGGTTTTGCATCGAAGCGGAAGCTTTTTCAAGAATTGTAAGATTCTCGATCAGTAATTTAAAATTAGTTAACTTTTTCTTCGTAAATTTTGTTACGATAATTTAGAGAACATTTTTAAAAAAGTAATTTAATTTTTAAAAAATATTCTAAAGATATTTATTCGTTACAAGTTGGAATTGTCCTTGGAAACAGCAAGTTATGTATTATAATATAGCTTAAGCTATGCCGTGCCTGGCCGTATATTCGAAGATATATGATCCATGAATTTCTGAGAATTGGCCAACATTATCTGACTTACTGTGCCGTGCACGCGTCAAGGGTGAAAGTGAAAAATAAATAGTGTTGCGAATAAGACAGGACAGCAGCTACAATGCTACAAAAATAATATACAGAATTTATTTTCCACTAAA] consensusID : consensus_2001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [AACGGTGCACTTTGTTAATTCATTAATTTTTTTTTCTTTTTCTTCGTAAATTTTGTTACGATAATTTAGAGAATATTTTTAAAAAAGTAATTTAATTTTTAAAAAATATTCTAAAGGTATTTATTCGTTACAAGTTCGAATTGTCCTTGGAAACAGCAAGTTATGTATTATAATATAGCTTAAGCTATGCCGTGCCTGGCCGTATATTCGAAGATATATGATCCATGAATTTCTGAGAATTGGCCAACATTATCTGACTTTACTGTGCCGTGCACGCGTCAAGGGTGAAAGTGAAAAATAAATAGTGTTGCGAATAAGACAGGACAGCAGCTACAATGCTACAAAAATAATATACAGAATTTATTTTCCACTAAAACAATTATACGAGTTTATAACGAATATAAATAAAACGAAATTGCATCTCAATCTGAAATTTTTTAAATATATTTAAAAGAAGTAGATTTCTT] [+] EMBL BI516929 [AACGGTGCACTTTGTTAATTCATTAATTTTTTTTTCTTTTTCTTCGTAAATTTTGTTACGATAATTTAGAGAATATTTTTAAAAAAGTAATTTAATTTTTAAAAAATATTCTAAAGGTATTTATTCGTTACAAGTTCGAATTGTCCTTGGAAACAGCAAGTTATGTATTATAATATAGCTTAAGCTATGCCGTGCCTGGCCGTATATTCGAAGATATATGATCCATGAATTTCTGAGAATTGGCCAACATTATCTGACTTTACTGTGCCGTGCACGCGTCAAGGGTGAAAGTGAAAAATAAATAGTGTTGCGAATAAGACAGGACAGCAGCTACAATGCTACAAAAATAATATACAGAATTTATTTTCCACTAAAACAATTATACGAGTTTATAACGAATATAAATAAAACGAAATTGCATCTCAATCTGAAATTTTTTAAATATATTTAAAAGAAGTAGATTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2001#0 AATCGATATGAAAAATACTGTTGCAAGCTATGATTGATCTTTAAACGTATTGCTCGATCA 60 consensus_2001#1 ------------------------------------------------------------ consensus_2001#0 TTAGGAATTTAAGAAACTCGAGGTTTTGCATCGAAGCGGAAGCTTTTTCAAGAATTGTAA 120 consensus_2001#1 ----------------------------------------------------AACGGT-- 6 ** ** consensus_2001#0 GATTCTCGATCAGTAATTTAAAATTAGTTAACTTTTTCTTCGTAAATTTTGTTACGATAA 180 consensus_2001#1 GCACTTTGTTAATTCATT--AATTTTTTTTTCTTTTTCTTCGTAAATTTTGTTACGATAA 64 * * * * * * *** ** ** ** ***************************** consensus_2001#0 TTTAGAGAACATTTTTAAAAAAGTAATTTAATTTTTAAAAAATATTCTAAAGATATTTAT 240 consensus_2001#1 TTTAGAGAATATTTTTAAAAAAGTAATTTAATTTTTAAAAAATATTCTAAAGGTATTTAT 124 ********* ****************************************** ******* consensus_2001#0 TCGTTACAAGTTGGAATTGTCCTTGGAAACAGCAAGTTATGTATTATAATATAGCTTAAG 300 consensus_2001#1 TCGTTACAAGTTCGAATTGTCCTTGGAAACAGCAAGTTATGTATTATAATATAGCTTAAG 184 ************ *********************************************** consensus_2001#0 CTATGCCGTGCCTGGCCGTATATTCGAAGATATATGATCCATGAATTTCTGAGAATTGGC 360 consensus_2001#1 CTATGCCGTGCCTGGCCGTATATTCGAAGATATATGATCCATGAATTTCTGAGAATTGGC 244 ************************************************************ consensus_2001#0 CAACATTATCTGACTT-ACTGTGCCGTGCACGCGTCAAGGGTGAAAGTGAAAAATAAATA 419 consensus_2001#1 CAACATTATCTGACTTTACTGTGCCGTGCACGCGTCAAGGGTGAAAGTGAAAAATAAATA 304 **************** ******************************************* consensus_2001#0 GTGTTGCGAATAAGACAGGACAGCAGCTACAATGCTACAAAAATAATATACAGAATTTAT 479 consensus_2001#1 GTGTTGCGAATAAGACAGGACAGCAGCTACAATGCTACAAAAATAATATACAGAATTTAT 364 ************************************************************ consensus_2001#0 TTTCCACTAAA------------------------------------------------- 490 consensus_2001#1 TTTCCACTAAAACAATTATACGAGTTTATAACGAATATAAATAAAACGAAATTGCATCTC 424 *********** consensus_2001#0 ------------------------------------------- consensus_2001#1 AATCTGAAATTTTTTAAATATATTTAAAAGAAGTAGATTTCTT 467 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |