|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[GCCCGCTGGTAATGCATACACTTGGCCGAGTGCGTACGCGCACCTACACGTGTGTGTGTGCACGTAACGCCATGTTGGAACGCGCAACAGTGTGTCCAACCACACGTAGAGATAGGGAAGCCTTTTAACGAATGTTGGAAAGTTCACTGAACCCATTATCGCTTAGGTAATAATTGTTGTTGCACTTGAAGATTTCCCCTGCTACTCTTGGCAAAGGAACTTGCACTGAAATGTATGGAGATTCCATTCAAAATAAGTGCAATTGCACTTTGCAACTACGTAGATGCACGAAATGCATAATAGTGGCATATGCAGAATCCATTGTGAAACCATCTAATTTTGCCTCATAAAATTATTTTCCTTTTGTAATCGTTTCAAGATTATAGCCTAGCTTACTTGAAGGAGTTATCTCGTGTTGTGTGTTGGGCAATATTTCTGGAAGATGGATAACGAGGAATTTAACTTAATCTGGACTCCAAATGGTGTAAAATTTTTACGATTATTTTTACACGAATGTAAATTTCCTGGTTTTAAAATAGAACTACTTCCGTC]
[+] EMBL BI505019 [GCCCGCTGGTAATGCATACACTTGGCCGAGTGCGTACGCGCACCTACACGTGTGTGTGTGCACGTAACGCCATGTTGGAACGCGCAACAGTGTGTCCAACCACACGTAGAGATAGGGAAGCCTTTTAACGAATGTTGGAAAGTTCACTGAACCCATTATCGCTTAGGTAATAATTGTTGTTGCACTTGAAGATTTCCCCTGCTACTCTTGGCAAAGGAACTTGCACTGAAATGTATGGAGATTCCATTCAAAATAAGTGCAATTGCACTTTGCAACTACGTAGATGCACGAAATGCATAATAGTGGCATATGCAGAATCCATTGTGAAACCATCTAATTTTGCCTCATAAAATTATTTTCCTTTTGTAATCGTTTCAAGATTATAGCCTAGCTTACTTGAAGGAGTTATCTCGTGTTGTGTGTTGGGCAATATTTCTGGAAGATGGATAACGAGGAATTTAACTTAATCTGGACTCCAAATGGTGTAAAATTTTTACGATTATTTTTACACGAATGTAAATTTCCTGGTTTTAAAATAGAACTACTTCCGTC]
consensusID : consensus_2034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[TTTTTTTTTATTGATATAAGTATATTTGGATATGTAAATCAATTTAATATAAATAAATTTTCAATGGTGTCTTACGTGTAAAATGTATTTTCATTTCAGGTAATAATTGTTGTTGCACATGAAGATTTCCCCTGCTACTCTTGGCAAAGGAACTTGCACTGAAATGTATGGAGATTCCATTCAAAATAAGTGCAATTGCACTTTGCAACTACGTAGATGCACGAAATGCATAATAGTGGCATATGCAGAATCCATTGTGAAACCATCTAATTTTGCCTCATAAAATTATTTTCCTTTTGTAATCGTTTCAAGATTATAGCCTAGCTTACTTGAAGGAGTTATCTCGTGTTGTGTGTTGGGCAATATTTTTCCAATAAAAATCTTCTTCAATCTTTAA]
[-] EMBL BI504306 [TTTTTTTTTATTGATATAAGTATATTTGGATATGTAAATCAATTTAATATAAATAAATTTTCAATGGTGTCTTACGTGTAAAATGTATTTTCATTTCAGGTAATAATTGTTGTTGCACATGAAGATTTCCCCTGCTACTCTTGGCAAAGGAACTTGCACTGAAATGTATGGAGATTCCATTCAAAATAAGTGCAATTGCACTTTGCAACTACGTAGATGCACGAAATGCATAATAGTGGCATATGCAGAATCCATTGTGAAACCATCTAATTTTGCCTCATAAAATTATTTTCCTTTTGTAATCGTTTCAAGATTATAGCCTAGCTTACTTGAAGGAGTTATCTCGTGTTGTGTGTTGGGCAATATTTTTCCAATAAAAATCTTCTTCAATCTTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2034#0 GCCCGCTGGTAATGCATACACTTGGCCGAGTGCGTACGCGCACCTACACGTGTGTGTGTG 60
consensus_2034#1 --------------------------------------------------TTTTTTTTTA 10
* * * * *
consensus_2034#0 CACGTAACGCCATGTTGGAACGCGCAACAGTGTGTCCAACCACACGTAGAGATAGGGAAG 120
consensus_2034#1 TTGATATAAGTATATTTGGATATGTA--AATCAATTTAAT-ATAAATAAATTTTCAATGG 67
** ** ** * * * * * * * ** * * ** * * *
consensus_2034#0 CCTTTTAACGAATGTTGGAAAGTTCACTGAACCCATTATCGCTTAGGTAATAATTGTTGT 180
consensus_2034#1 TGTCTTA-CG-----TGTAAAATGTATT---TTCATT-----TCAGGTAATAATTGTTGT 113
* *** ** ** *** * * * **** * ****************
consensus_2034#0 TGCACTTGAAGATTTCCCCTGCTACTCTTGGCAAAGGAACTTGCACTGAAATGTATGGAG 240
consensus_2034#1 TGCACATGAAGATTTCCCCTGCTACTCTTGGCAAAGGAACTTGCACTGAAATGTATGGAG 173
***** ******************************************************
consensus_2034#0 ATTCCATTCAAAATAAGTGCAATTGCACTTTGCAACTACGTAGATGCACGAAATGCATAA 300
consensus_2034#1 ATTCCATTCAAAATAAGTGCAATTGCACTTTGCAACTACGTAGATGCACGAAATGCATAA 233
************************************************************
consensus_2034#0 TAGTGGCATATGCAGAATCCATTGTGAAACCATCTAATTTTGCCTCATAAAATTATTTTC 360
consensus_2034#1 TAGTGGCATATGCAGAATCCATTGTGAAACCATCTAATTTTGCCTCATAAAATTATTTTC 293
************************************************************
consensus_2034#0 CTTTTGTAATCGTTTCAAGATTATAGCCTAGCTTACTTGAAGGAGTTATCTCGTGTTGTG 420
consensus_2034#1 CTTTTGTAATCGTTTCAAGATTATAGCCTAGCTTACTTGAAGGAGTTATCTCGTGTTGTG 353
************************************************************
consensus_2034#0 TGTTGGGCAATATTTCTGGAAGATGGATAACGAGGAATTTAACTTAATCTGGACTCCAAA 480
consensus_2034#1 TGTTGGGCAATATTTTTCCAATAAAAATCTTCTTCAATCT---TTAA------------- 397
*************** * ** * ** *** * ****
consensus_2034#0 TGGTGTAAAATTTTTACGATTATTTTTACACGAATGTAAATTTCCTGGTTTTAAAATAGA 540
consensus_2034#1 ------------------------------------------------------------
consensus_2034#0 ACTACTTCCGTC 552
consensus_2034#1 ------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |