These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTTCTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAGGGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGAGAGCGAGAGAGCAAAAGGGAGAGAGAAAGAGAGAGAGAAAGGGAGAGAAAGGGAGAGAGAAAGGGAAAGAGTGTGT] [+] EMBL BI510921 [GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTTCTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAGGGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGAGAGCGAGAGAGCAAAAGGGAGAGAGAAAGAGAGAGAGAAAGGGAGAGAAAGGGAGAGAGAAAGGGAAAGAGTGTGT] consensusID : consensus_2089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAGGTGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGACGACGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACGAACGAAAAGCATCGCGTGGAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAACATCATGTACGAAATACACATACACACACATATATACATATATACAAACACAAAGGAAGTAGGCATAT] [+] EMBL BI516405 [CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAACTGTAATGTAATTATATTATGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATATACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAGGTGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATATATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGACGACGATGATGACAATGATTACAATTACGATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACGAACGAAAAGCATCGCGTGGAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAACATCATGTACGAAATACACATACACACACATATATACATATATACAAACACAAAGGAAGTAGGCATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2089#0 GGGAAAACAGCGAGCATGAGTTTGAGTGTTGTGTATCGTCCTTTCTTTTTTTTTTTTTTT 60 consensus_2089#1 ------------------------------------------------------------ consensus_2089#0 CTGCGAACGATGGCGAATCGATCGATTCGATTGCGAATTACCAACAACAGATAATATAAC 120 consensus_2089#1 ------------------CGATCGATTCGATTGCGAATTACCAACAACAGATAATATAAC 42 ****************************************** consensus_2089#0 TGTAATGTAATTATATTATGATGTACGATGTAACGGTANGATACCGACGNNNNCNNAATA 180 consensus_2089#1 TGTAATGTAATTATATTATGATGTACGATGTAACGGTATGATACCGACGGTACCGTAATA 102 ************************************** ********** * **** consensus_2089#0 TACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGANNNCGAGCGAG 240 consensus_2089#1 TACATATTATAAATACAATTTCATAGAATACGAAGGATCGTTATAGCGAAGACGAGCGAG 162 ************************************************* ******** consensus_2089#0 GGGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATA 300 consensus_2089#1 GTGATTTTCTATTATTGCTATTGATTATTAACATTACCATTATATATATATATACACATA 222 * ********************************************************** consensus_2089#0 TATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGANNNCGATGAT 360 consensus_2089#1 TATCTCGTCATTACGGTTTCTTACGATGATCGCTGCGACGACGACGACGACGACGATGAT 282 ************************************************** ******* consensus_2089#0 GACAATGATTACAATTACGATCATCACGCGGATGAGAGA--GAGCGAGAGAGCAAAAGGG 418 consensus_2089#1 GACAATGATTACAATTACGATCATCACGCGGATGAGAGACTAACCGCGAAAGAGAATACG 342 *************************************** * ** ** ** ** * consensus_2089#0 AGAGAGAAAGAGAGAG-AGAAAGGGAGAGAA----------AGGGAGAGAGAAAGGGAAA 467 consensus_2089#1 AACGAAAAGCATCGCGTGGAAAATGCGCTAATTATTACATTGGAAAAATATCGAGAAAAA 402 * ** ** * * * **** * * ** * * * * ** *** consensus_2089#0 GAGTGTGT---------------------------------------------------- 475 consensus_2089#1 CATCATGTACGAAATACACATACACACACATATATACATATATACAAACACAAAGGAAGT 462 * *** consensus_2089#0 -------- consensus_2089#1 AGGCATAT 470 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |