These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 798 fasta sequence [TCTCGTTTATTCAACACTTACTTTTATCATACATCCTTACGCGTAAGATCTACATAAAAACTTATTAAAACGAGCTTAATCATATGTTCATAACTGGTTCTGGGCTGGGGCAGCTTCGCGTGACGCTTCGGTGCACGGTGTTTCCGTTCGCCAGGCGCGAAACAATCAAGGAGCCTGATCCTTCGGTGCTGAAGAGGTTCGAGTTGGCCGTGCCGAAGGACGCTCACGTGGGCCAGGATTCTTGTACGCGGACGTTGCTCGTCGCGTTCCAATCCCATGCCCGAACGGATTCCGAGTAACAGCCGGTTTCTGGATTCAACATTTTGCGCTCACTCTCGGC---CATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGAGATCACCCTGAGTTTGTTGGGTCTGTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACCGGCGGCAGCCGTCGACGACGCGCCCGTGGGCGTCGGTGTGTGTATCCCACCGCTCGCGGGACTCGTCGGCTCCGATTTTATACTACTACCGCTGGGACTGTGGCTTGACATTTGAGATCCCGGCTGCGCTTGATGATAAGGTGAGGGCGATCCACCCGGCACGGTGGTGCTCCCGTAACCACCGTAACCGTTCATGTAGCTGTTTATCGGGCTCGGGCTACCGCCGCCCATGTGGTGGCCCATGTCGTACCTCG] [+] EMBL BI504651 [TCTCGTTTATTCAACACTTACTTTTATCATACATCCTTACGCGTAAGATCTACATAAAAACTTATTAAAACGAGCTTAATCATATGTTCATAACTGGTTCTGGGCTGGGGCAGCTTCGCGTGACGCTTCGGTGCACGGTGTTTCCGTTCGCCAGGCGCGAAACAATCAAGGAGCCTGATCCTTCGGTGCTGAAGAGGTTCGAGTTGGCCGTGCCGAAGGACGCTCACGTGGGCCAGGATTCTTGTACGCGGACGTTGCTCGTCGCGTTCCAATCCCATGCCCGAACGGATTCCGAGTAACAGCCGGTTTCTGGATTCAACATTTTGCGCTCACTCTCGGC CATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGAGATCACCCTGAGTTTGTTGGGTCTGTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACCGGCGGCAGCCGTCGACGACGCGCCCGTGGGCGTCGGTGTGTGTATCCCACCGCTCGCGGGACTCGTCGGCTCCGATT ] [+] EMBL BI512558 [TCTCGTTTATTCAACACTTACTTTTATCATACATCCTTACGCGTAAGATCTACATAAAAACTTATTAAAACGAGCTTAATCATATGTTCATAACTGGTTCTGGGCTGGGGCAGCTTCGCGTGACGCTTCGGTGCACGGTGTTTCCGTTCGCCAGGCGCGAAACAATCAAGGAGCCTGATCCTTCGGTGCTGAAGAGGTTCGAGTTGGCCGTGCCGAAGGACGCTCACGTGGGCCAGGATTCTTGTACGCGGACGTTGCTCGTCGCGTTCCAATCCCATGCCCGAACGGATTCCGAGTAACAGCCGGTTTCTGGATTCAACATTTTGCGCTCACTCTCGGC CATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGAGATCACCCTG ] [+] EMBL BI507678 [ AACAATCAAGGAGCCTGATCCTTCGGTGCTGAAGAGGTTCGAGTTGGCCGTGCCGAAGGACGCTCACGTGGGCCAGGATTCTTGTACGCGGACGTTGCTCGTCGCGTTCCAATCCCATGCCCGAACGGATTCCGAGTAACAGCCGGTTTCTGGATTCAACATTTTGCGCTCACTCTCGGC CATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGAGATCACCCTGAGTTTGTTGGGTCTGTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACCGGCGGCAGCCGTCGACGACGCGCCCGTGGGCGTCGGTGTGTGTATCCCACCGCTCGCGGGACTCGTCGGCTCCGATTTTATACTACTACCGCTGGGACTGTGGCTTGACATTTGAGATCCCGGCTGCGCTTGATGATAAGGTGAGGGCGATCCACCCGGCACGGTGGTGCTCCCGTAACCACCGTAACCGTTCATGTAGCTGTTTA ] [+] EMBL BI507707 [ cttCTGTATCTAAGCTATCATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGAGATCACCCTGAGTTTGTTGGGTCTGTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACCGGCGGCAGCCGTCGACGACGCGCCCGTGGGCGTCGGTGTGTGTATCCCACCGCTCGCGGGACTCGTCGGCTCCGATTTTATACTACTACCGCTGGGACTGTGGCTTGACATTTGAGATCCCGGCTGCGCTTGATGATAAGGTGAGGGCGATCCACCCGGCACGGTGGTGCTCCCGTAACCACCGTAACCGTTCATGTAGCTGTTTATCGGGCTCGGGCTACCGCCGCCCATGTGGTGGCCCATGTCGTACCTCG] [+] EMBL BI507305 [ TCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGAGATCACCCTGAGTTTGTTGGGTCTGTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACCGGCGGCAGCCGTCGACGACGCGCCCGTGGGCGTCGGTGTGTGTATCCCACCGCTCGCGGGACTCGTCGGCTCCGATTTTATACTACTACCGCTGGGACTGTGGCTTGACATTTGAGATCCCGGCTGCGCTTGATGATAAGGTGAGGGCGATCCACCCGGCACGGTGGTGCTCCCGTAACCACCGTAACCGTTCATGTAGCTGTTTATCGGGCTCGGGCTACCGCCGCCCATGTGGTGGCCCATGTCGTACCTCG] consensusID : consensus_213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [TCGGAATTCATCAGCGTATTATAACAATCCCAATATGTTATTCTCGCGGTCGGTNTTTTTTTATATTTTCTTTTTCTTCTTCCTCTGTCTCTCTCTGTTTCTTTTTTCTTTTTTTCTTTCTTTTTTACTTATACTCGTTCTCTCTTTCTTTCTCTTTCTCTCTCTCTCTCGTTAGAACATCATCTTCATACTTTCAAAGTTGTCCCAAAGTGTTACGCACGTTGTCCTCTCTTCTGTATCTAAGCTATCATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTNAGATCACCCTGAGTTTGTTGGGTNTNTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACC] [+] EMBL BI507812 [TCGGAATTCATCAGCGTATTATAACAATCCCAATATGTTATTCTCGCGGTCGGTNTTTTTTTATATTTTCTTTTTCTTCTTCCTCTGTCTCTCTCTGTTTCTTTTTTCTTTTTTTCTTTCTTTTTTACTTATACTCGTTCTCTCTTTCTTTCTCTTTCTCTCTCTCTCTCGTTAGAACATCATCTTCATACTTTCAAAGTTGTCCCAAAGTGTTACGCACGTTGTCCTCTCTTCTGTATCTAAGCTATCATGTGCGTTAGAGGTGGAATCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGCCATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTNAGATCACCCTGAGTTTGTTGGGTNTNTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_213#0 TCTCGTTTATTCAACACTTACTTTTATCATACATCCTTACGCGTAAGATCTACATAAAAA 60 consensus_213#1 ------------------------------------------------------------ consensus_213#0 CTTATTAAAACGAGCTTAATCATATGTTCATAACTGGTTCTGGGCTGGGGCAGCTTCGCG 120 consensus_213#1 ---------TCGGAATTCATCAGCGTATTATAAC-AATCCCAATATGTTATTCTCGCGGT 50 ** ** **** * ***** * * ** ** consensus_213#0 TGACGCTTCGGTGCACGGTGTTTCCGTTCGCCAGGCGCGAAACAATCAAGGAGCCTGATC 180 consensus_213#1 CGGTNTTTTTTTATATTTTCTTTTTCTTCTTCCTCTGT----CTCTC------TCTGTTT 100 * ** * * * *** *** * * * ** *** * consensus_213#0 CTTCGGTGCTGAAGAGGTTCGAGTTGGCCGTGCCGAAGGACGCTCACGTGGGCCAGGATT 240 consensus_213#1 CTTTTTTCTT-------TTTTTCTT--TCTTTTTTACTTATACTCGTTCTCTCTTTCTTT 151 *** * * ** ** * * * * *** * ** consensus_213#0 CTTGTACGCGGACGTTGCTCGTCGCGTTCCAATCCCATGCCCGAACGGATTCCGAGTAAC 300 consensus_213#1 CTCTTTCTCTCTCTCTCTCGTTAGAACATCATCTTCATACTTTCAAAGTTGTCCCAAAGT 211 ** * * * * * * * ** *** * * * * * * consensus_213#0 AGCCGGTTTCTGGATTCAACATTTTGCGCTCACTCTCGGCCATGTGCGTTAGAGGTGGAA 360 consensus_213#1 GTTACGCACGTTG-TCCTCTCTTCTGTATCTAAGCT--ATCATGTGCGTTAGAGGTGGAA 268 * * * * * ** ** * ** ******************** consensus_213#0 TCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGC 420 consensus_213#1 TCGCCGTGTGATGCTGCGCCAAGGGATCGGGAGATGGTCCAGGTGAGTAGACACCGGCGC 328 ************************************************************ consensus_213#0 CATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTGA 480 consensus_213#1 CATGTTGGACGACTCCCTGTTCCACTCCTTGAGGCAAATACATGGAGATCATTTGCCTNA 388 ********************************************************** * consensus_213#0 GATCACCCTGAGTTTGTTGGGTCTGTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGC 540 consensus_213#1 GATCACCCTGAGTTTGTTGGGTNTNTTGTTGGCCCATGTATTCCCGTTTAACTATTTGGC 448 ********************** * *********************************** consensus_213#0 CACCGGCGGCAGCCGTCGACGACGCGCCCGTGGGCGTCGGTGTGTGTATCCCACCGCTCG 600 consensus_213#1 CACC-------------------------------------------------------- 452 **** consensus_213#0 CGGGACTCGTCGGCTCCGATTTTATACTACTACCGCTGGGACTGTGGCTTGACATTTGAG 660 consensus_213#1 ------------------------------------------------------------ consensus_213#0 ATCCCGGCTGCGCTTGATGATAAGGTGAGGGCGATCCACCCGGCACGGTGGTGCTCCCGT 720 consensus_213#1 ------------------------------------------------------------ consensus_213#0 AACCACCGTAACCGTTCATGTAGCTGTTTATCGGGCTCGGGCTACCGCCGCCCATGTGGT 780 consensus_213#1 ------------------------------------------------------------ consensus_213#0 GGCCCATGTCGTACCTCG 798 consensus_213#1 ------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |