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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence
[GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGTTGAACTTATTA]
[+] EMBL BI508974 [GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATTGGTTATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAA ]
[-] EMBL BI509539 [ AACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCGGCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAATATAACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTATAAACATTATTGTTGAACTTATTA]
consensusID : consensus_214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence
[TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT]
[+] EMBL BI504653 [TCTCAGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAATACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAAAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAA ]
[+] EMBL BI510156 [ CACACTTGCATCATTGATGAATTTCAAATAAACATACAATGATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTCGTAATGTAGCAACATTATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTCCAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGACCACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAGGAACAAATTTAATTATGTTAAATGTGAAAACACCCACACAAATGGCAGGAGTAGTGATAGTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT]
consensusID : consensus_214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 217 fasta sequence
[TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA]
[-] EMBL BI506256 [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA]
[-] EMBL BI509574 [TTTTTCATGCTTATACTGACTGTCTAAGCCAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTAGAACTGCAGAAGGATAAACCAGGAAAGCTAAACCTGGACCGGAAGCCGCAACATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAAAAAAAAAAAAAGCAACGGGCCGCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_214#0 GTGAAAATTTTATTTATTTAAATCTGTTCGTGATATGATAGGATATTTTCCACCAACAAC 60
consensus_214#2 ------------------------------------------------------------
consensus_214#1 --------------------------------------------------------TCTC 4
consensus_214#0 AAGGATAATAACCAATCATGTCACGAATTCCATCATAAAAACGATTTACACCAAATGCCC 120
consensus_214#2 ------------------------------------------------------------
consensus_214#1 AGTCATTCATTGCAAAGAACACACTTGCATCATTGATGAATTTCAAATAAACATACAATG 64
consensus_214#0 ATGAGATAGCAATACATTCAAAGAACATTAAAAACAAAAGACAAAATCCGCTTACAGCGT 180
consensus_214#2 ------------------------------------------------------------
consensus_214#1 ATATTCATAATTCGAAATCTGCATTAATAGAGGCAGCTTTTGTGGGATTTAATTTCATTC 124
consensus_214#0 ATGAATCTAAGAGTTGAAATACNNNCATTCCTCCTTCAGTAATGCAAAAAAGGCCAATAA 240
consensus_214#2 ------------------------------------------------------------
consensus_214#1 GTAATGTAGCAACATCATCTTCTATTCTTATTAATTTTCGGAATTTTTCAGAGATAGTTC 184
consensus_214#0 GATATGAGACAAAGCATACAATAGCTATAAATAATTCTTTTCGTTTTCTGAGAAGTCGCG 300
consensus_214#2 ------------------------------------------------------------
consensus_214#1 CAGATGTTGTGAACCAGATATATATCATATATCCAGGAATACATAACATTGAAGATAGAC 244
consensus_214#0 GCCATTCATCTACTGCAGCCGTGATAAAGCCTTCAACTGTACAAAACTGACTGTCTAAGC 360
consensus_214#2 ----------------------------TTTTTCATGCTTATA---CTGACTGTCTAAGC 29
consensus_214#1 CACAAAGCCATCCTAACACATGACTCCACCATGGATACTCATATGTAAGATATTTTACAG 304
* * * * ** * **
consensus_214#0 CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA 420
consensus_214#2 CAATAAGTATAAGCATGAAAAAGAATAAACAAGACCAAATTGATGATCCTGGTAATTCTA 89
consensus_214#1 GAACAAATTTAATTATGTTAAATG-TGAAAACACCCACACAAATGGCAGGAGTAGTGATA 363
** ** * *** *** *** * ** * *** * *** *** * **
consensus_214#0 GAACTGCAGA------AGGATAAACCAGGAAAG---CTAAACCTGGACCGGAAGCCGCAA 471
consensus_214#2 GAACTGCAGA------AGGATAAACCAGGAAAG---CTAAACCTGGACCGGAAGCCGCAA 140
consensus_214#1 GTCCAACATATTTTCCACCAACAACAAGGATAATAACCAATCATGTCACGAATTCCATCA 423
* * ** * * * *** **** * * ** * ** ** * ** *
consensus_214#0 CATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAA----AATATA 527
consensus_214#2 CATCCGCAACGGGCTTTTGTTGTTCATGAGCCATGAAACCAACCACAGAA----AAAAAA 196
consensus_214#1 TAAAAACGATTTACACCAAATGCCCATGAGATAGCAATACATTCAAAGAACATTAAAAAC 483
* * * * ** ****** * ** ** ** **** ** *
consensus_214#0 ACAATACCACTAAGCATACTAGTACAAGAATTTACTGTACAAACAATAAGTGCGTCTTTA 587
consensus_214#2 AAAAAGCAACGGGCCGCAACA--------------------------------------- 217
consensus_214#1 AAAAGACAAAATCCGCTTACAGCGTATGAATCTAAGAGTTGAAATACATACATTCCTCCT 543
* ** * * *
consensus_214#0 TAAACATTATTGTTGAACTTATTA------------------------------------ 611
consensus_214#2 ------------------------------------------------------------
consensus_214#1 TCAGTAATGCAAAAAAGGCCAATAAGATATGAGACAAAGCATACAATAGCTATAAATAAT 603
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |