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Apis mellifera
cluster # 2155 cluster # 2155       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2155#0 length = 508 sequences # 1  
consensus_2155#1 length = 411 sequences # 1  

consensusID : consensus_2155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence
                              [ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGACCATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGCTACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGATAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAATTCATATGGATTAATTTTACGATTAAATTTTGG]

[+] EMBL BI512069             [ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGACCATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGCTACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGATAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAATTCATATGGATTAATTTTACGATTAAATTTTGG]


>consensus_2155#0 ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGAC CATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGC TACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGA TAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATA TGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCA GGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATT CGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATA TTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAATTCAT ATGGATTAATTTTACGATTAAATTTTGG



consensusID : consensus_2155#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence
                              [AATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAACATTATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAACCAAGATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAAATAGAGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC]

[-] EMBL BI509135             [AATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAACATTATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAACCAAGATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAAATAGAGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC]


>consensus_2155#1 AATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGA ATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTG AATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGC CATATTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAA CATTATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAAC CAAGATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAA ATAGAGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2155#0      ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGAC 60
consensus_2155#1      ------------------------------------------------------------
                                                                                  

consensus_2155#0      CATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGC 120
consensus_2155#1      ------------------------------------------------------------
                                                                                  

consensus_2155#0      TACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGA 180
consensus_2155#1      ------------------------------------------------------------
                                                                                  

consensus_2155#0      TAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATA 240
consensus_2155#1      --------------------------------------------------------AATA 4
                                                                              ****

consensus_2155#0      TGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCA 300
consensus_2155#1      TGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGAATCA 64
                      ***************************************************** ******

consensus_2155#0      GGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATT 360
consensus_2155#1      GGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATT 124
                      ************************************************************

consensus_2155#0      CGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATA 420
consensus_2155#1      CGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATA 184
                      ************************************************************

consensus_2155#0      TTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAAT--TC 478
consensus_2155#1      TTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAACATT 244
                      ********************************* **************  *****   * 

consensus_2155#0      ATAT--GGATTAATTTTACG----------ATTAAATTTTGG------------------ 508
consensus_2155#1      ATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAACCAAG 304
                      ****   *** ** ******          ******* **                    

consensus_2155#0      ------------------------------------------------------------
consensus_2155#1      ATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAAATAG 364
                                                                                  

consensus_2155#0      -----------------------------------------------
consensus_2155#1      AGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC 411
                                                                     




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)