These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGACCATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGCTACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGATAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAATTCATATGGATTAATTTTACGATTAAATTTTGG] [+] EMBL BI512069 [ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGACCATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGCTACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGATAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAATTCATATGGATTAATTTTACGATTAAATTTTGG] consensusID : consensus_2155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [AATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAACATTATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAACCAAGATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAAATAGAGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC] [-] EMBL BI509135 [AATATGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGAATCAGGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATTCGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATATTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAACATTATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAACCAAGATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAAATAGAGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2155#0 ATGTCTCTTAATGAATGTTACCGAAGAGGAGTTGAACAACGGNNNGAAGCAAATATCGAC 60 consensus_2155#1 ------------------------------------------------------------ consensus_2155#0 CATTGCTAGAGGAATAATACCGGAACTCGAATTTCCAGAAGCAGAAGAGGCGTTAAGGGC 120 consensus_2155#1 ------------------------------------------------------------ consensus_2155#0 TACGAAGAAACTGCTAGTGGTAAGGCACCCATTTGAAAGATTGTTGAGCGCGTATCGCGA 180 consensus_2155#1 ------------------------------------------------------------ consensus_2155#0 TAAACTGGAAAACTCTGTGGCTGGAAGGGAACACGGGACACTTCACTTTTATCAGAAATA 240 consensus_2155#1 --------------------------------------------------------AATA 4 **** consensus_2155#0 TGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAGGAATCA 300 consensus_2155#1 TGGTAGCAAGATTGTTGAAAAGTACCGTGAGGCAAACTTCACACGGCCCAAAAAGAATCA 64 ***************************************************** ****** consensus_2155#0 GGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATT 360 consensus_2155#1 GGAGATCAGACAGAAAGGCGTACCTCCACCGGCGGGAATTGAACCAACTTTCCGTGAATT 124 ************************************************************ consensus_2155#0 CGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATA 420 consensus_2155#1 CGTGCAATATTTAATTCATACTGATTTGCCTAATTATGGAGATGATCATTGGATGCCATA 184 ************************************************************ consensus_2155#0 TTATTGGTTCTGTGCACTTTGCATTGTAGATTATGACATAATTGCAAANNTAGAAT--TC 478 consensus_2155#1 TTATTGGTTCTGTGCACTTTGCATTGTAGATTACGACATAATTGCAAAGGTAGAAACATT 244 ********************************* ************** ***** * consensus_2155#0 ATAT--GGATTAATTTTACG----------ATTAAATTTTGG------------------ 508 consensus_2155#1 ATATCAAGATCAAATTTACGCAATTCATAAATTAAATCTTCAAGGGATAATTAAACCAAG 304 **** *** ** ****** ******* ** consensus_2155#0 ------------------------------------------------------------ consensus_2155#1 ATGGCAACATAATCGTAGTCACTCGAATGCATCGAAAATATATTTTAGCCAATTAAATAG 364 consensus_2155#0 ----------------------------------------------- consensus_2155#1 AGATATGGTAGAAAAATTATATGAGAAGTTCAAGCTGGATTTTGAAC 411 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |