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Apis mellifera
cluster # 2188 cluster # 2188       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2188#0 length = 546 sequences # 1  
consensus_2188#1 length = 452 sequences # 1  

consensusID : consensus_2188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence
                              [CACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGATCTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATATATATATATGTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGCCGCCGATACGAAGAGGATCAGGGATCGTTGCCCTGAAATCTCGAATCCCCCCCTTGTAAATTGTTTTCCTTCGAAAAAATCTATCTGCCCCTTCCTTCTAGAATTGGTAGAATTCGAGTAGGAACAGGAGCGAAACTCGTCCACGAGCTTAGACGAGATGATTAATAAGCATAAGCTTCTGAGAGACACGAGCCATTATTTTAATGGGTCGTTAGACTCGATAAGCGATTCCGCCTTCATCCAGCTGGCTAATTTGACGAGCTTTTAACAAAATAGGTCGGATGTAAGTAAGAATAATAACGACGTACTCGCCGAGTTTAGATTTTAGATCGGTGGGACGAGTCTTGTAGAAGTAGATAGTAAGTAGAGAGGAGAGAATT]

[+] EMBL BI514275             [CACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGATCTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATATATATATATGTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGCCGCCGATACGAAGAGGATCAGGGATCGTTGCCCTGAAATCTCGAATCCCCCCCTTGTAAATTGTTTTCCTTCGAAAAAATCTATCTGCCCCTTCCTTCTAGAATTGGTAGAATTCGAGTAGGAACAGGAGCGAAACTCGTCCACGAGCTTAGACGAGATGATTAATAAGCATAAGCTTCTGAGAGACACGAGCCATTATTTTAATGGGTCGTTAGACTCGATAAGCGATTCCGCCTTCATCCAGCTGGCTAATTTGACGAGCTTTTAACAAAATAGGTCGGATGTAAGTAAGAATAATAACGACGTACTCGCCGAGTTTAGATTTTAGATCGGTGGGACGAGTCTTGTAGAAGTAGATAGTAAGTAGAGAGGAGAGAATT]


>consensus_2188#0 CACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGATCTTGGACGAGAC CAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATATATATATATGTAC GCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGCCGCCGATACGAAGA GGATCAGGGATCGTTGCCCTGAAATCTCGAATCCCCCCCTTGTAAATTGTTTTCCTTCGA AAAAATCTATCTGCCCCTTCCTTCTAGAATTGGTAGAATTCGAGTAGGAACAGGAGCGAA ACTCGTCCACGAGCTTAGACGAGATGATTAATAAGCATAAGCTTCTGAGAGACACGAGCC ATTATTTTAATGGGTCGTTAGACTCGATAAGCGATTCCGCCTTCATCCAGCTGGCTAATT TGACGAGCTTTTAACAAAATAGGTCGGATGTAAGTAAGAATAATAACGACGTACTCGCCG AGTTTAGATTTTAGATCGGTGGGACGAGTCTTGTAGAAGTAGATAGTAAGTAGAGAGGAG AGAATT



consensusID : consensus_2188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence
                              [TCGCCTCGACTCCGAGGGGCGTAACAAGGAGCTCTGGTACAAGGAAGGCTGCGCGACGGCTATTCAAATGTGGCTGGTGACCAGGCTGCACGTGGTCGGGACCGTTGGCCTCGTGGTGGCCTTCCTCCAGTTGTTCGGCCAGGTGGCCAGCATGATCCTCTTCTGCACCGTCAGGCACAAGAGGTCGTCCCACACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGATCTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATATATATATATATGTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGCCGCCGATACGAAGNGGATCAGGGATCGTTGCCCCTGTATGCCCCGAAATCTCGAATCCCCCCCTTGTAAATTGTTTTCCTTCGAAAAAATCT]

[+] EMBL BI516261             [TCGCCTCGACTCCGAGGGGCGTAACAAGGAGCTCTGGTACAAGGAAGGCTGCGCGACGGCTATTCAAATGTGGCTGGTGACCAGGCTGCACGTGGTCGGGACCGTTGGCCTCGTGGTGGCCTTCCTCCAGTTGTTCGGCCAGGTGGCCAGCATGATCCTCTTCTGCACCGTCAGGCACAAGAGGTCGTCCCACACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGATCTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATATATATATATATGTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGCCGCCGATACGAAGNGGATCAGGGATCGTTGCCCCTGTATGCCCCGAAATCTCGAATCCCCCCCTTGTAAATTGTTTTCCTTCGAAAAAATCT]


>consensus_2188#1 TCGCCTCGACTCCGAGGGGCGTAACAAGGAGCTCTGGTACAAGGAAGGCTGCGCGACGGC TATTCAAATGTGGCTGGTGACCAGGCTGCACGTGGTCGGGACCGTTGGCCTCGTGGTGGC CTTCCTCCAGTTGTTCGGCCAGGTGGCCAGCATGATCCTCTTCTGCACCGTCAGGCACAA GAGGTCGTCCCACACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGAT CTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATAT ATATATATATGTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGC CGCCGATACGAAGNGGATCAGGGATCGTTGCCCCTGTATGCCCCGAAATCTCGAATCCCC CCCTTGTAAATTGTTTTCCTTCGAAAAAATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2188#0      ------------------------------------------------------------
consensus_2188#1      TCGCCTCGACTCCGAGGGGCGTAACAAGGAGCTCTGGTACAAGGAAGGCTGCGCGACGGC 60
                                                                                  

consensus_2188#0      ------------------------------------------------------------
consensus_2188#1      TATTCAAATGTGGCTGGTGACCAGGCTGCACGTGGTCGGGACCGTTGGCCTCGTGGTGGC 120
                                                                                  

consensus_2188#0      ------------------------------------------------------------
consensus_2188#1      CTTCCTCCAGTTGTTCGGCCAGGTGGCCAGCATGATCCTCTTCTGCACCGTCAGGCACAA 180
                                                                                  

consensus_2188#0      ------------CACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGAT 48
consensus_2188#1      GAGGTCGTCCCACACGTACAAGAGTTACGACACAACCAACACCTAGAATTTCAGATGGAT 240
                                  ************************************************

consensus_2188#0      CTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATAT 108
consensus_2188#1      CTTGGACGAGACCAGCGTCTAAGATCCATCGAAACTCTCGACGATTTTATATATATATAT 300
                      ************************************************************

consensus_2188#0      ATATATAT--GTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGC 166
consensus_2188#1      ATATATATATGTACGCGCACATGTATATCTCACGGCCGCAATGATCGCGATCTTCTTCGC 360
                      ********  **************************************************

consensus_2188#0      CGCCGATACGAAGAGGATCAGGGATCGTTGCCCT----------GAAATCTCGAATCCCC 216
consensus_2188#1      CGCCGATACGAAGNGGATCAGGGATCGTTGCCCCTGTATGCCCCGAAATCTCGAATCCCC 420
                      ************* *******************           ****************

consensus_2188#0      CCCTTGTAAATTGTTTTCCTTCGAAAAAATCTATCTGCCCCTTCCTTCTAGAATTGGTAG 276
consensus_2188#1      CCCTTGTAAATTGTTTTCCTTCGAAAAAATCT---------------------------- 452
                      ********************************                            

consensus_2188#0      AATTCGAGTAGGAACAGGAGCGAAACTCGTCCACGAGCTTAGACGAGATGATTAATAAGC 336
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      ATAAGCTTCTGAGAGACACGAGCCATTATTTTAATGGGTCGTTAGACTCGATAAGCGATT 396
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      CCGCCTTCATCCAGCTGGCTAATTTGACGAGCTTTTAACAAAATAGGTCGGATGTAAGTA 456
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      AGAATAATAACGACGTACTCGCCGAGTTTAGATTTTAGATCGGTGGGACGAGTCTTGTAG 516
consensus_2188#1      ------------------------------------------------------------
                                                                                  

consensus_2188#0      AAGTAGATAGTAAGTAGAGAGGAGAGAATT 546
consensus_2188#1      ------------------------------
                                                    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)