These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 816 fasta sequence [TGAAAGGAGCACTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCTCGAGCGAGTTCGATATACTCGAGCGTGCG] [+] EMBL BI508956 [TGAAAGGAGCACTTTCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACT ] [+] EMBL BI502713 [ CCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAA ] [+] EMBL BI516300 [ GTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCTCGAGCGAGTTCGATATACTCGAGCGTGCG] [+] EMBL BI516361 [ GTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTTTTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAAGAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTACTACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAACAAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATATCACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCTCGAGCGAGTTCGATA ] consensusID : consensus_219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCGACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGAGCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAAC] [+] EMBL BI508683 [TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCGACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGAGCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGCCAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAAC] consensusID : consensus_219#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [ACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGATTAGATTAATTTTCTTCCGAATGTTTTCGATTCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCTGTGTATATGAAAGAACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGAGAAAAAAAA] [+] EMBL BI505940 [ACTTTCCCCCTTTTACACACACGCGCGTGGACCCCTCTCGCCGTTGATTTCGATTTCCAACGCGCTTCGCGCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCATCCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGCGTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACGTAAACATACATACATACATTCGAACGAAGGATTAGATTAATTTTCTTCCGAATGTTTTCGATTCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCTGTGTATATGAAAGAACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGAGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_219#0 ------------------------------------------------------------ consensus_219#1 TTGGAGAGAGAAAAAAAAAAAAGAAAAATGTCACGGACCGTCGACGGCAGGTCGTCATCG 60 consensus_219#2 ------------------------------------------------------------ consensus_219#0 ---------------------------------------TGAAAGGAGCACT--CCCCCT 19 consensus_219#1 ACACACTTTTTGTCTCGTAGAACCGTTTAGAACCGCCCTTGAAAGGAGCACTTTCCCCCT 120 consensus_219#2 -------------------------------------------------ACTTTCCCCCT 11 *** ****** consensus_219#0 TTTACACACACGCGCGTGGACCCCT-CTCGCCGTTGATTTCGATTTCCAACGCGCTTCGC 78 consensus_219#1 TTTACACACACGCGCGTGGACCCCTTCTCGCCGTTGATTTCGATTTCCAACGCGTTTCGC 180 consensus_219#2 TTTACACACACGCGCGTGGACCCCT-CTCGCCGTTGATTTCGATTTCCAACGCGCTTCGC 70 ************************* **************************** ***** consensus_219#0 GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTC------ 132 consensus_219#1 GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGCCCCTCGA 240 consensus_219#2 GCGATTGGCGACAGATGTCGTCGCGGAGATATGCAGGAATTCCTGTATGCGGTC------ 124 **************************************************** * consensus_219#0 ---GATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT 189 consensus_219#1 GCCGATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT 300 consensus_219#2 ---GATCTTTTCTCTCGAACAAGTTTGAAAGATCCAAGCGGGAATCAAGGTGAACCGCAT 181 ********************************************************* consensus_219#0 CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGA 249 consensus_219#1 CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAACAGTGGAGA 360 consensus_219#2 CCTTCGACGAATCGTAAACCGGTCACGCGACGTTACGAGACGGAGAAGGAAGAATGGAGA 241 *************************************************** * ****** consensus_219#0 GAGAGAGAGAGAGAGA--AGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC 307 consensus_219#1 GAGAGAGAGAGAGAGAGAAGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC 420 consensus_219#2 GAGAGAGAGAGAGAGA--AGGAATGCGAGATAGTACGCGCGGGGAAGGGAGGATACACGC 299 **************** ****************************************** consensus_219#0 GTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACG 367 consensus_219#1 GTACACATCACATATACACAAACTATATATATATA--------------AAACACAGACG 466 consensus_219#2 GTACACATCACATATACACAAACTATATATATATATATATATATATATAAAACACAGACG 359 *********************************** *********** consensus_219#0 TAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGC 427 consensus_219#1 TAAACATACATACATACATTCGAACGAAGGAAAAACTACATGCAATTCTACGATCACTGC 526 consensus_219#2 TAAACATACATACATACATTCGAACGAAGG----ATTAGAT-TAATTTT-------CTTC 407 ****************************** * ** ** **** * ** * consensus_219#0 CAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAACGTGTCGTAGTCGTCGTTT 487 consensus_219#1 CAAGGGCGTTAACCGTTGACGTCGATTTCTCGTTGTTTAAAC------------------ 568 consensus_219#2 CGAATGTTTTCGAT-TCGACGTCAAAATCGTGCAATAAAAAAGAGGAGGGAAGACAGTCT 466 * * * ** * ****** * ** * * *** consensus_219#0 TTCTCGAATGCAAAATTAAAATGTAATTATGAAAAAACGATCGGGAAAAAGAAGAAGGAA 547 consensus_219#1 ------------------------------------------------------------ consensus_219#2 GTGTATATGAAAGAACCGTAATTCTCAAAAGAATAATATTGCCTGTATATCTTGGAGAGA 526 consensus_219#0 GAGAGGAGTGTGAAAGAGTAAAAGGGGAGATTACACTACTACTATTACTACTACTACTAC 607 consensus_219#1 ------------------------------------------------------------ consensus_219#2 GAAAAAAAA--------------------------------------------------- 535 consensus_219#0 TACTACTACTACTACCACGCGCGTTATTTGGCGACATCTAGAGATATTATAAGCATTAAC 667 consensus_219#1 ------------------------------------------------------------ consensus_219#2 ------------------------------------------------------------ consensus_219#0 AAAAAAATGAGATAGAGAAGAAAAATGCAAAAAATGTATGTGTATATACATCATACATAT 727 consensus_219#1 ------------------------------------------------------------ consensus_219#2 ------------------------------------------------------------ consensus_219#0 CACATCTATATATATATATATATATACACACACATATGTGTATATAGATGTGCGTTCGCT 787 consensus_219#1 ------------------------------------------------------------ consensus_219#2 ------------------------------------------------------------ consensus_219#0 CGAGCGAGTTCGATATACTCGAGCGTGCG 816 consensus_219#1 ----------------------------- consensus_219#2 ----------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |