These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCTTGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAACAGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCGGCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGACGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAAATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATT] [+] EMBL BI504088 [ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCTTGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAACAGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCGGCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGACGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAAATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATT] consensusID : consensus_2196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCTTCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGTAAA] [+] EMBL BI503874 [TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCTTCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2196#0 ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCT 60 consensus_2196#1 ------------------------------------------------------------ consensus_2196#0 TGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAAC 120 consensus_2196#1 ------------------------------------------------------------ consensus_2196#0 AGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCG 180 consensus_2196#1 ------------------------------------------------------------ consensus_2196#0 GCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGA 240 consensus_2196#1 ---------------------TGTCGAAGAGGTTA--GGATTATTATTACGTACGTTTGA 37 * ***** * ** * *** * ** *** consensus_2196#0 CGATGGAGAGCGACAA---CGTGGAGACGGAGGGTGTGGTGCTGTACA-AATCCATCATG 296 consensus_2196#1 TAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCG 97 ** ** * ** ** * * * ** * * ** * ** * ** * consensus_2196#0 CTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATA 356 consensus_2196#1 GCCTCGATTATTTATTCTTCTCTTCCCGCGG--GGGAACGTCTCGAGAAAGG-AGGAATC 154 ***** * * * * * * * ****** * *** ***** consensus_2196#0 GAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTG 416 consensus_2196#1 TCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTA 214 * * * * ** * ** * * * * ** * consensus_2196#0 CCAAATTCGGCCAACGTTTATTACGCCGT-CAACACCGCGCACAATCTCAACTTCATTCT 475 consensus_2196#1 TCCATGACAGTC--CGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCT 272 * * * * * **** ** ** ** ** * **** * * ** ***** consensus_2196#0 ACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCA 535 consensus_2196#1 TTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAA---CAGCGATCGAATCGGATAA 329 * * * * * * * * * ** * ** * * ** * * consensus_2196#0 CAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGA 595 consensus_2196#1 CAT-TGAT--CGTCGATCAAGCTGTCCTTCCCGTAAA----------------------- 363 ** * * ***** * * ** * * consensus_2196#0 TGGATT 601 consensus_2196#1 ------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |