Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2204 cluster # 2204       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2204#0 length = 281 sequences # 1  
 consensus_2204#1 length = 270 sequences # 1  
consensusID : consensus_2204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence 
                              [TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTTCTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGATTGTCAAAAAAAAAA]

[+] EMBL BI508595             [TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTTCTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGATTGTCAAAAAAAAAA]




>consensus_2204#0
TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTT
CTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCT
TGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTC
GGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCG
GACAATCGACACGCCAGAAGTTTCGATTGTCAAAAAAAAAA

consensusID : consensus_2204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence 
                              [CCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATCGTTCGAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGGTAAAAATGAAAAATTCCATCTTTTAAAACC]

[+] EMBL BI516842             [CCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCGGACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATCGTTCGAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGGTAAAAATGAAAAATTCCATCTTTTAAAACC]




>consensus_2204#1
CCCTTGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCG
ATTCGGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTT
TTCGGACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATC
GTTCGAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGG
TAAAAATGAAAAATTCCATCTTTTAAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2204#0      TTTTACCTAAGAAACTCGGAAAATCGGATACGGATCGAAAAGGAGGAGGAGAGCTACGTT 60
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      CTTCGAGGGATTTTTCGCGACGCGATCGATAACGAATCTCGATTGTATCGTGCCCTCCCT 120
consensus_2204#1      --------------------------------------------------------CCCT 4
                                                                              ****

consensus_2204#0      TGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTC 180
consensus_2204#1      TGGAGACTGTTTATACTCTTTTTAAACGGGTTTCGAAAGGAGTTGGACGGAGATCGATTC 64
                      ************************************************************

consensus_2204#0      GGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCG 240
consensus_2204#1      GGCATCGAGTGAGATTGCTTTTCGAGAAAGAAAAGAAGTCGTTCGTGGGTTATTTTTTCG 124
                      ************************************************************

consensus_2204#0      GACAATCGACACGCCAGAAGTTTCGA-----------TTGTCAAAAAAAAAA-------- 281
consensus_2204#1      GACAATCGACACGCCAGAAGTTTCGAATCGATTTCTCTTCTCGTGGAACGGGAATCGTTC 184
                      **************************           ** **    **            

consensus_2204#0      ------------------------------------------------------------
consensus_2204#1      GAGATTGGGAAAGTTTCTTTCGAAAGAGACCGAAAGCCTGTTTTATCCTCCGATGGTAAA 244
                                                                                  

consensus_2204#0      --------------------------
consensus_2204#1      AATGAAAAATTCCATCTTTTAAAACC 270


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)