These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCATTATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGCTTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATGCAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGTTATATTATT] [+] EMBL BI504456 [TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCATTATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGCTTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATGCAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGTTATATTATT] consensusID : consensus_2218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA] [+] EMBL BI503817 [GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2218#0 TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCAT 60 consensus_2218#1 ------------------------------------------------------------ consensus_2218#0 TATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGC 120 consensus_2218#1 ------------------------------------------------------------ consensus_2218#0 TTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG 180 consensus_2218#1 -----------------GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG 43 ******************************************* consensus_2218#0 ATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATG 240 consensus_2218#1 ATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATG 103 **** ******************** *********** ********** consensus_2218#0 CAATTTGCAAAAAA-TTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAA 299 consensus_2218#1 CAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAA 163 ************** ********************************************* consensus_2218#0 GATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAG 359 consensus_2218#1 GNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNN 223 * ******************************************************** consensus_2218#0 ACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTT 419 consensus_2218#1 NCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTT 283 *********************************************************** consensus_2218#0 AATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAG 479 consensus_2218#1 AATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAG 343 ********* ** ** ************************** * *** ********* consensus_2218#0 TTATATTATT-------------------------------------------------- 489 consensus_2218#1 TTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTA 403 ********** consensus_2218#0 ------------------------------------ consensus_2218#1 TTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA 439 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |