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Apis mellifera
cluster # 2218 cluster # 2218       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2218#0 length = 489 sequences # 1  
consensus_2218#1 length = 439 sequences # 1  

consensusID : consensus_2218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence
                              [TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCATTATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGCTTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATGCAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGTTATATTATT]

[+] EMBL BI504456             [TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCATTATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGCTTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATGCAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGTTATATTATT]


>consensus_2218#0 TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCAT TATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGC TTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG ATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATG CAATTTGCAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAG ATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAGA CCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTA ATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAGT TATATTATT



consensusID : consensus_2218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA]

[+] EMBL BI503817             [GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA]


>consensus_2218#1 GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGGATAATCACCCAATTTCA AGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATGCAATTTGCAAAAAAATT GTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAAGNTGTAATCTCACGATT CTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNNNCCAACCACGTTGATGC ATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTTAATAAATTTNNNTTTAA CATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAGTTATATTATTATTAAAA TGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTATTTGCTTGTAAAAACTA TTAAAATAAATGCAAGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2218#0      TTTTTTTTTTTTTTCCTTCTTTCCCTCTCTTTTCCCTTCTTTCCTTGTTCTATTATCCAT 60
consensus_2218#1      ------------------------------------------------------------
                                                                                  

consensus_2218#0      TATTTTGACTAAATCAATCGGAAAGATAAACACGTGTGCAAGTTTCTTCTCCCATTCCGC 120
consensus_2218#1      ------------------------------------------------------------
                                                                                  

consensus_2218#0      TTAATTAACATCAAAACGAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG 180
consensus_2218#1      -----------------GAAGTATATCTGACGTTGAAAAGTACCGGGAAACGATGTAAGG 43
                                       *******************************************

consensus_2218#0      ATAANNNNNNNNNNTCAAGGTTAGGATCGAAATCGAAGTATTGTATTCGAACGATGAATG 240
consensus_2218#1      ATAATCACCCAATTTCAAGGTTAGGATCGAAATCNNAGTATTGTATTNNNACGATGAATG 103
                      ****          ********************  ***********   **********

consensus_2218#0      CAATTTGCAAAAAA-TTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAA 299
consensus_2218#1      CAATTTGCAAAAAAATTGTACAACTGCGATAGGCTTCTGAGCTAATTAAACCAAAAAGAA 163
                      ************** *********************************************

consensus_2218#0      GATGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGAG 359
consensus_2218#1      GNTGTAATCTCACGATTCTTCACCACCTTCCTATGCATTTTTGGATTATTTTTCAACGNN 223
                      * ********************************************************  

consensus_2218#0      ACCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTT 419
consensus_2218#1      NCCAACCACGTTGATGCATTAAGATAAATTTATGTACGAAGTCATTTATATTTTTTTTTT 283
                       ***********************************************************

consensus_2218#0      AATAAATTTTTATTCAATATTCATCAAGAGCAACTTTTTAATTAGTNCAAAGAATAAAAG 479
consensus_2218#1      AATAAATTTNNNTTTAACATTCATCAAGAGCAACTTTTTAATTAATGCAATGAATAAAAG 343
                      *********   ** ** ************************** * *** *********

consensus_2218#0      TTATATTATT-------------------------------------------------- 489
consensus_2218#1      TTATATTATTATTAAAATGAATGATTGGTAAAATCTGGATATAAATCTATAGTTATATTA 403
                      **********                                                  

consensus_2218#0      ------------------------------------
consensus_2218#1      TTTGCTTGTAAAAACTATTAAAATAAATGCAAGTGA 439
                                                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)