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Apis mellifera
cluster # 2235 cluster # 2235       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2235#0 length = 575 sequences # 1  
consensus_2235#1 length = 544 sequences # 1  

consensusID : consensus_2235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence
                              [ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTTTCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGTCGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAATGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTTGGTTCGAGCGTTGTTAGAAAGTATAGTTTTTGGAA]

[+] EMBL BI504899             [ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTTTCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGTCGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAATGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTTGGTTCGAGCGTTGTTAGAAAGTATAGTTTTTGGAA]


>consensus_2235#0 ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTT TCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGT CGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTG TATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACAC GGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGG AGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTG GGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGT GAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAA TGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTT GGTTCGAGCGTTGTTAGAAAGTATAGTTTTTGGAA



consensusID : consensus_2235#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence
                              [CGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTAATTTCTTATGATGAAAATTTTTTTGCTCTACTACGATCAAAATTTCCATAAATTTGCATATTTTTTTTTTATAATTAATTTTAATATTTTCTCGATTCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTATTCAACAAGAAAGGAAAATCTTTTAATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATTTCAAAGATGCAGTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCGCCGA]

[+] EMBL BI503777             [CGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTAATTTCTTATGATGAAAATTTTTTTGCTCTACTACGATCAAAATTTCCATAAATTTGCATATTTTTTTTTTATAATTAATTTTAATATTTTCTCGATTCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTATTCAACAAGAAAGGAAAATCTTTTAATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATTTCAAAGATGCAGTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCGCCGA]


>consensus_2235#1 CGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCA CGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTC TGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAA CTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTAATTTCTTATGATGAAAATTTTTTT GCTCTACTACGATCAAAATTTCCATAAATTTGCATATTTTTTTTTTATAATTAATTTTAA TATTTTCTCGATTCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTATTCAACAAGAAAG GAAAATCTTTTAATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATT TCAAAGATGCAGTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCG AACTCGGTGAACGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCG CCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2235#0      ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTT 60
consensus_2235#1      ------------------------------------------------------------
                                                                                  

consensus_2235#0      TCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGT 120
consensus_2235#1      ------------------------------------------------------------
                                                                                  

consensus_2235#0      CGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTG 180
consensus_2235#1      -----------------------------------------CGTTGTTCGGCTCGATGTG 19
                                                               *******************

consensus_2235#0      TATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACAC 240
consensus_2235#1      TATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACAC 79
                      ************************************************************

consensus_2235#0      GGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGG 300
consensus_2235#1      GGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGG 139
                      ************************************************************

consensus_2235#0      AGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTG 360
consensus_2235#1      AGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTG 199
                      ************************************************************

consensus_2235#0      GGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGT 420
consensus_2235#1      GGCCAAAGAAATAAG--TAATTTCTTATG----ATGAAAATTTTTTTGCTCTACTACGAT 253
                      ***************  ****     * *    *  ** *     *  * * *   ** *

consensus_2235#0      GAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAA 480
consensus_2235#1      CAAAATTTCCATAAATTTGCATATTTTTTTTTTATA-ATTAATTTTAATATTTTCTCGAT 312
                       **   ***        ** ** * ***  *  **  * *   **  *          * 

consensus_2235#0      TGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTT 540
consensus_2235#1      TCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTAT-TCAACAAGAAAGGAAAATCTTTT 371
                      *  **       *     * * ** ***   ** *   * ** * **   * **** ***

consensus_2235#0      GGTTCGAGCGT-TGTTAGAAAGTA---TAGTTTTTGGAA--------------------- 575
consensus_2235#1      AATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATTTCAAAGATGCA 431
                        *   *  ** *  *   *****   * **    * **                     

consensus_2235#0      ------------------------------------------------------------
consensus_2235#1      GTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAA 491
                                                                                  

consensus_2235#0      -----------------------------------------------------
consensus_2235#1      CGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCGCCGA 544
                                                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)