These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTTTCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGTCGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAATGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTTGGTTCGAGCGTTGTTAGAAAGTATAGTTTTTGGAA] [+] EMBL BI504899 [ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTTTCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGTCGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAATGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTTGGTTCGAGCGTTGTTAGAAAGTATAGTTTTTGGAA] consensusID : consensus_2235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [CGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTAATTTCTTATGATGAAAATTTTTTTGCTCTACTACGATCAAAATTTCCATAAATTTGCATATTTTTTTTTTATAATTAATTTTAATATTTTCTCGATTCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTATTCAACAAGAAAGGAAAATCTTTTAATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATTTCAAAGATGCAGTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCGCCGA] [+] EMBL BI503777 [CGTTGTTCGGCTCGATGTGTATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACACGGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGGAGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTGGGCCAAAGAAATAAGTAATTTCTTATGATGAAAATTTTTTTGCTCTACTACGATCAAAATTTCCATAAATTTGCATATTTTTTTTTTATAATTAATTTTAATATTTTCTCGATTCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTATTCAACAAGAAAGGAAAATCTTTTAATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATTTCAAAGATGCAGTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAACGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2235#0 ATTTATCAAATGTTGGTCAAGCTCAATGATAAATTTGCTTAAATTGCCGCACGATATCTT 60 consensus_2235#1 ------------------------------------------------------------ consensus_2235#0 TCCCCAAGTGGTGGAGACAAGTGGAAATTTCGGCAGTACCCCAAAAGATTTATTCGGGGT 120 consensus_2235#1 ------------------------------------------------------------ consensus_2235#0 CGAAATTCCGATATTATGTTCAACGACAGATCAATCGGCATCGTTGTTCGGCTCGATGTG 180 consensus_2235#1 -----------------------------------------CGTTGTTCGGCTCGATGTG 19 ******************* consensus_2235#0 TATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACAC 240 consensus_2235#1 TATGCAACCGGGAGATTTGAAAATCACCATGGGAACTGGCACGTTTTTGAACGTGAACAC 79 ************************************************************ consensus_2235#0 GGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGG 300 consensus_2235#1 GGGTGATATCCCGCACGCTTCTGTCGCAGGACTTTATCCTCTGATCGCGTGGCAAACAGG 139 ************************************************************ consensus_2235#0 AGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTG 360 consensus_2235#1 AGATGAATTAGTATACATGGCAGAAGGTGCATGGAACGAAACTGGAGGTATCATTGAGTG 199 ************************************************************ consensus_2235#0 GGCCAAAGAAATAAGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGT 420 consensus_2235#1 GGCCAAAGAAATAAG--TAATTTCTTATG----ATGAAAATTTTTTTGCTCTACTACGAT 253 *************** **** * * * ** * * * * * ** * consensus_2235#0 GAACGATTCTGATGGAGTGTATTTCTTTCCTGCATTCAGTGGATTACACGCGCCGATAAA 480 consensus_2235#1 CAAAATTTCCATAAATTTGCATATTTTTTTTTTATA-ATTAATTTTAATATTTTCTCGAT 312 ** *** ** ** * *** * ** * * ** * * consensus_2235#0 TGATTACAGGGCAGCGGCAGGTTTCATAGGCCTAAAACCTACCACAAGAAAGAATCATTT 540 consensus_2235#1 TCTTTCTTAAAAAAAAAAAAGATTAATATCGCTTAT-TCAACAAGAAAGGAAAATCTTTT 371 * ** * * * ** *** ** * * ** * ** * **** *** consensus_2235#0 GGTTCGAGCGT-TGTTAGAAAGTA---TAGTTTTTGGAA--------------------- 575 consensus_2235#1 AATCAAATAGTATAATTTGAAGTAAACTGGTCAACGAAACGCTAGAATTTCAAAGATGCA 431 * * ** * * ***** * ** * ** consensus_2235#0 ------------------------------------------------------------ consensus_2235#1 GTTTGTTTCAGGTCTAATCGACCAAGTAGCAGAAACAGCAAATATCGCGAACTCGGTGAA 491 consensus_2235#0 ----------------------------------------------------- consensus_2235#1 CGATTCTGATGGAGTGTATTTCGTTCCTGCATTCAGTGGATTACACGCGCCGA 544 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |