These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNACCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATAGCGAATAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACAATTCCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCATCACCCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCCACACCACAGCCACAACCACCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCAGCAAGTTGCACCTGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTGAGTCACCTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGTGTGGTGGAGGACCTGGCAAAGCAGCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC] [+] EMBL BI510367 [AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNACCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATAGCGAATAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACAATTCCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCATCACCCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCCACACCACAGCCACAACCACCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCAGCAAGTTGCACCTGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTGAGTCACCTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGTGTGGTGGAGGACCTGGCAAAGCAGCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC] consensusID : consensus_2239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [CATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGGTGGGTAGATTGTTCAGCAGTAATTTTTTTAAATTGCTCTAAGGTCGTTTTATTATCTTTATCTTTTAGCTCTATTTCTCTTCTTTCTCTATCACACTAGTTGCTCTTGCTAGGTAACCCTATCACATACTTATATGCAATTTCCTTATTCAAGTATTTCGATAATCCTCGTTGCACTTTGCACCTTCTTCTTGCTGGCACACCTTTACTTATTAGGAATACACCATCGATCGGCTGTCTGGTGGCGTATAAACCCGCGATAACTCATCCTCGAGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATTGTAATTTTTAGTAATTAACATGTCCCTCCTGGTTCCTATCAGCGGATACAAACATCACCTAATGTTGGAGGCAGACAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA] [+] EMBL BI512376 [CATCGATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGAGCTACAGGTGGGTAGATTGTTCAGCAGTAATTTTTTTAAATTGCTCTAAGGTCGTTTTATTATCTTTATCTTTTAGCTCTATTTCTCTTCTTTCTCTATCACACTAGTTGCTCTTGCTAGGTAACCCTATCACATACTTATATGCAATTTCCTTATTCAAGTATTTCGATAATCCTCGTTGCACTTTGCACCTTCTTCTTGCTGGCACACCTTTACTTATTAGGAATACACCATCGATCGGCTGTCTGGTGGCGTATAAACCCGCGATAACTCATCCTCGAGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATTGTAATTTTTAGTAATTAACATGTCCCTCCTGGTTCCTATCAGCGGATACAAACATCACCTAATGTTGGAGGCAGACAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2239#0 AAGACGATGCAAAGGAATCTAAGCTCGTAACAGAAAGAACGCCTGGCCCGAAGGCGNNNA 60 consensus_2239#1 ------------------------------------------------------------ consensus_2239#0 CCGGGAAGAGTATAATCAGGGCGCGAAGCGATGTACGCAGCTGCGGGTGGCGCCAGTATA 120 consensus_2239#1 -------------------------CATCGATCCTCG-ATCTCCGAGTTTCACCATCTTC 34 * **** ** * ** ** ** * *** * consensus_2239#0 GCGAA---TAGGAGGAAGCAGAAACGATTGCAGTTAAACAGACGCGTCGCTGAGAGTACA 177 consensus_2239#1 TTCAGAGCTACAGGTGGGTAGATTGTTCAGCAGTAATTTTTTTAAATTGCTCTAAG-GTC 93 * ** * * *** ***** * * *** ** consensus_2239#0 ATTCCATCACGATTGAAGACAATTCCAGTTTCTCAGCACCACTACCACCACCAACACCAT 237 consensus_2239#1 GTTTTATTATCTTTATC-----TTTTAGCTCTATTTCTCTTCTTTCTCTATCACACTAGT 148 ** ** * ** ** ** * * * ** * * * ** * consensus_2239#0 CACCCCAGCAAGTTTGCTCGTCCGCACGTTGTTCCACCATCTTCC-ACACCACAGCCACA 296 consensus_2239#1 TGCTCTTGCTAGGTAACCCTATCACATACTTATATGCAATTTCCTTATTCAAGTATTTCG 208 * * ** ** * * * * ** * * * ** * * * * * * consensus_2239#0 ACCACCGTCATCTACATTTCATCCGAGCATCGATCGACGGCGTCATGTCGAGAAGTGTCA 356 consensus_2239#1 ATAATCCTCGT-TGCACTTTGCACCTTCTTC--TTGCTGGC---ACACCTTTACTTATTA 262 * * * ** * * ** ** * * ** * * *** * * * * * * consensus_2239#0 GCAAGTTGCACC-TGTTTCTCCAATCCAGTTTCCAATATCGCCACCACCACTATCCCTTG 415 consensus_2239#1 GGAA--TACACCATCGATCGGCTGTCTGGTGGCGTATAAACCCGCGATAACTCATCCTCG 320 * ** * **** * ** * ** ** * *** ** * * *** *** * consensus_2239#0 AGTCAC-CTAGTTCAGTTACTTGTGCCACTAAATCTAATTTTCCTTTTCCACCAACATCG 474 consensus_2239#1 AGCGGCTCCAGGTTCGTCAGCTGCTTATCCAAACTAAATTGTAATTTTTAGTAATTAACA 380 ** * * ** * ** * ** * *** **** * **** * * * consensus_2239#0 ATCCTCGATCTCCGAGTTTCACCATCTTCTTCAGA-GCTACAGTGTGGTGGAGGACCTGG 533 consensus_2239#1 TGTCCC---TCCTGGTTCCTATCAGCGGATACAAACATCACCTAATGTTGGAGG--CAGA 435 * * * * * * ** * * ** * ** ** ****** * * consensus_2239#0 CAAAGCAGCATGGCAAGGTTGCAGCAGNCCTTCTCCCCTTCCTTTATCTCCTATGTC 590 consensus_2239#1 CAGTGCAATGTTAGGAGTAAGTTGTAGTGTCTGGTATCAATCACA------------ 480 ** *** * ** * * ** * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |