These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGAGCCGACAAATGTGATGGTCAACATCTTTCTCCGCTCTATCAGCAAAATAAATGATTATAACATGGTGAGTGCAATCCAAGTCAATCATCTCAAACAAAAGGCCTATATATACCAATCTGTATATCCACACATTGTGTATCTATTAATATTTAACGTCACGTGTATATGATGCCGTAAGACTTGCACTTGTCTGTACTTGTATTTATTATTACGTGTGATGTGTATGTATATTTATATACGTATGCTGGAGGAGGTGCTTCGCATATATATACATACGTATATAAATATATACATGATGGATAAGCCGCGCTAACAGTTGGATGTGTGCTATCAGTCGCACCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATGTTAATATTATATATACATATATATGTATATGTGTATATGTGTAT] [+] EMBL BI504325 [CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGAGCCGACAAATGTGATGGTCAACATCTTTCTCCGCTCTATCAGCAAAATAAATGATTATAACATGGTGAGTGCAATCCAAGTCAATCATCTCAAACAAAAGGCCTATATATACCAATCTGTATATCCACACATTGTGTATCTATTAATATTTAACGTCACGTGTATATGATGCCGTAAGACTTGCACTTGTCTGTACTTGTATTTATTATTACGTGTGATGTGTATGTATATTTATATACGTATGCTGGAGGAGGTGCTTCGCATATATATACATACGTATATAAATATATACATGATGGATAAGCCGCGCTAACAGTTGGATGTGTGCTATCAGTCGCACCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATGTTAATATTATATATACATATATATGTATATGTGTATATGTGTAT] consensusID : consensus_237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCCGCGGTTGTCCGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA] [+] EMBL BI506862 [AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCCGCGGTTGTCCGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA] consensusID : consensus_237#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA] [+] EMBL BI506663 [ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGATTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATG ] [+] EMBL BI509808 [ ATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA] consensusID : consensus_237#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [ACCATAGTAACGTCATCTATTTTTGAGATACTTCGAACAAATATGTTGACGCGGACAACCGCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAATCGTTGAATAATATGAAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGATTTTTGTTGAAACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTGTTTTTTCGCTCGTTTCAAGTTCCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTTTTTGTTTTCTTAAATAAATTTTCACTTTCATTCAAAAAAATTAGATCCTTTAGNGAAAGGGTGGATGGAAATCGTCGCTGAAATAAATACGATATACATACGTGAGATTTATAATAATTCGTATATTTATGTTCTCTGAATTAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGATCGTTAAAGAAAAATCGAAAAAAAAGAGNAAATTCTAAATCTTGAGAATGATA] [+] EMBL BI502837 [ACCATAGTAACGTCATCTATTTTTGAGATACTTCGAACAAATATGTTGACGCGGACAACCGCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAATCGTTGAATAATATGAAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGATTTTTGTTGAAACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTGTTTTTTCGCTCGTTTCAAGTTCCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTTTTTGTTTTCTTAAATAAATTTTCACTTTCATTCAAAAAAATTAGATCCTTTAGNGAAAGGGTGGATGGAAATCGTCGCTGAAATAAATACGATATACATACGTGAGATTTATAATAATTCGTATATTTATGTTCTCTGAATTAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGATCGTTAAAGAAAAATCGAAAAAAAAGAGNAAATTCTAAATCTTGAGAATGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_237#1 ------------------------------------------------------------ consensus_237#2 ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTG 60 consensus_237#0 ------------------------CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTG 36 consensus_237#3 ------------------------------------------------------------ consensus_237#1 ------AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC 54 consensus_237#2 GCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC 120 consensus_237#0 GCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC 96 consensus_237#3 ----ACCATAGTAACGTCATC--TATTTTTGAGATACTTCGAACAAATATGTTGACGCGG 54 ** * * ** ** * ** ** * ** *** *** ** ** * consensus_237#1 GCAGGGAAAGGTGAAT-TACCG--GGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGG 111 consensus_237#2 GCAGGGAAAGGTGAAT-TACCG--GGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGG 177 consensus_237#0 GCAGGGAAAGGTGAAT-TACCG--GGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGG 153 consensus_237#3 ACAACCGCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAA--TCGTTGA 112 ** ** ** ** * * *** ** ** * **** *** * * * consensus_237#1 AGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGT 171 consensus_237#2 AGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGT 237 consensus_237#0 AGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGAGCCGACAAATGT 213 consensus_237#3 ATAATATGAAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGAT-T 171 * *** ** *** * ** * * * * ** *** ** * * consensus_237#1 CCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCC 231 consensus_237#2 CCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATG-------- 289 consensus_237#0 GATGGTCAACATCTTTCTCCGCTCTATCAGCAAAATAAATGATTATAACATGGTGAG--- 270 consensus_237#3 TTTGTTGAAACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTG------------ 219 * * ** * * * * * consensus_237#1 GCGGTTGTCCGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATG 291 consensus_237#2 ------------------------------------------------------------ consensus_237#0 -----------------------------------------------TGCAATCCAAGTC 283 consensus_237#3 ------------------------------------------------------------ consensus_237#1 GAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGG-ATGAACG-ATTACG-ATTT 348 consensus_237#2 GAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGG-ATGAACG-ATTACG-ATTT 346 consensus_237#0 AATCATCTCAAACAAAAGGCCTATATATACCAATCTGTAT-ATCCACACATTGTGTATCT 342 consensus_237#3 --TTTTTTCGCTCGTTTCAAGTTCCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTT 277 * * * * * * ** * * consensus_237#1 AATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATG 408 consensus_237#2 AATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATG 406 consensus_237#0 ATTAATATTTAACGTCACGT---GTATATGATGCCGTAAGACTTGCACT-TGTCTGTAC- 397 consensus_237#3 TTTGTTTTCTTAAATAAATTTTCAC-TTTCATTCAAAAAAATTAGATCCTTTAGNGAAAG 336 * * * * * * * * * * * * * * consensus_237#1 CCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTA-------T 461 consensus_237#2 CCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTA-------T 459 consensus_237#0 TTGTATTTATTATTA-CGTGTGATGTGTATGTATATTTATATACGTATGCTGGAGGAGGT 456 consensus_237#3 GGTGGATGGAAATCGTCGCTGAAATAAATACGATATACATACGTGAGATTTATAA----T 392 * ** * * ** * * * consensus_237#1 GCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATC 521 consensus_237#2 GCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATC 519 consensus_237#0 GCTTCGCATATATATACATACGTATATAAATATATACATGATGGATAAGCCGCGCTAACA 516 consensus_237#3 AATTCGTATATTTATGTTCTCTGAATTAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGATC 452 * * ** ** * * consensus_237#1 CTTAACATTATCATGTCCGATGAATTTAA--AATTGTACCCCTTGG-ATCGACAAGTTTG 578 consensus_237#2 CTTAACATTATCATGTCCGATGAATTTAA--AATTGTACCCCTTGG-ATCGACAAGTTTG 576 consensus_237#0 GTTGGATGTGTGCTATCAGTCGCACCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATG 576 consensus_237#3 GTTAAA---GAAAAATCGAAAAAAAAGAGNAAATTCTAAATCTTGAGAATGATA------ 503 ** ** * *** * ** ** consensus_237#1 CTCATTGCGTATGGCAAGTTATGGTTGGACA-ACAGATGA---- 617 consensus_237#2 CTCATTGCGTATGGCAAGTTATGGTTGGACA-ACAGATGA---- 615 consensus_237#0 TTAATATTATATATACATATATATGTATATGTGTATATGTGTAT 620 consensus_237#3 -------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |