These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [AGTGCTCGACACCGCTGTTTAACAGGCCAGCTATAACTGTCGAGGATTTGCTGAAGGTGACCCTAAAAAAAGCACCGCAAAACTTTAAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCCTAGACATGTTACGCAGTGTGAAATTAAAATCTGCCAGGCGCAGAACGACTGATCAAATCATAAGGTCTCCAAGGAGCGGACGAATAATTAAAACGCGTACAGCGCCGAGTCTCAGTTTGTCTCCGATTACGAAAAACTCGGAGAACTCATTGGGTCGAATTCTGAAACAGGTGGAAATTAATAAACGTGGCCCAAGGCGTCTATTGTCGAGCTCGTCAAATTTTCGCGAAAATATTATTGGGAAAGATAATCAATTATCGGGCGTAGATACGAAAAATAACAATTCGCAATCTATGACTGCGTTACAGAAGTCGATAATCGTAGATTAAAGGAACATGTTATGTAATAATATTGATATCAGAAATCTTTATGTCGCAAACTTTAGTAAATTAACTTGTTATTTTGTTATTGATTAATCTTGATACATAGATCGGGTTATCTAATATAATATGATGAATAAGAATA] [+] EMBL BI504509 [AGTGCTCGACACCGCTGTTTAACAGGCCAGCTATAACTGTCGAGGATTTGCTGAAGGTGACCCTAAAAAAAGCACCGCAAAACTTTAAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCCTAGACATGTTACGCAGTGTGAAATTAAAATCTGCCAGGCGCAGAACGACTGATCAAATCATAAGGTCTCCAAGGAGCGGACGAATAATTAAAACGCGTACAGCGCCGAGTCTCAGTTTGTCTCCGATTACGAAAAACTCGGAGAACTCATTGGGTCGAATTCTGAAACAGGTGGAAATTAATAAACGTGGCCCAAGGCGTCTATTGTCGAGCTCGTCAAATTTTCGCGAAAATATTATTGGGAAAGATAATCAATTATCGGGCGTAGATACGAAAAATAACAATTCGCAATCTATGACTGCGTTACAGAAGTCGATAATCGTAGATTAAAGGAACATGTTATGTAATAATATTGATATCAGAAATCTTTATGTCGCAAACTTTAGTAAATTAACTTGTTATTTTGTTATTGATTAATCTTGATACATAGATCGGGTTATCTAATATAATATGATGAATAAGAATA] consensusID : consensus_2428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [AAATTTCTAAATTACTCCTACTTTAATCGTTTTCTATTTGCAAAAATTATTAAGTTAAACTAATTTTTAGAATCAAGCTGTTAGATTTTCTTATCGTCGATTCGTAAGAAGAATTACGTTGCTAAAGATAATACATTTTTCCAAGTATTTTAAATATTACTTTACTAGCCGGCCACTCGTCAAAGCGATTACAACTTTCACTCTGATCAATTGTTCCTCCAACCCTCGTTGCCATTCAACCGAACACTAGGGGGTTATTTAAAAATCCCAAGGTGATACATATATCTGTGTGAAAAATAAATCGGAAATCTGTCAAAGAGATTTCTTCTTCAGCACTTAAATTAATTTAAAATAAATATAATATGAATTGAAAGGATTAATTTGTCAATATCAAATATAATTTCTATCTTGGAATTATATATATATATATATATTAAAAATATACAAAGAAGAAAAATATTAATTTCAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCTTA] [+] EMBL BI503329 [AAATTTCTAAATTACTCCTACTTTAATCGTTTTCTATTTGCAAAAATTATTAAGTTAAACTAATTTTTAGAATCAAGCTGTTAGATTTTCTTATCGTCGATTCGTAAGAAGAATTACGTTGCTAAAGATAATACATTTTTCCAAGTATTTTAAATATTACTTTACTAGCCGGCCACTCGTCAAAGCGATTACAACTTTCACTCTGATCAATTGTTCCTCCAACCCTCGTTGCCATTCAACCGAACACTAGGGGGTTATTTAAAAATCCCAAGGTGATACATATATCTGTGTGAAAAATAAATCGGAAATCTGTCAAAGAGATTTCTTCTTCAGCACTTAAATTAATTTAAAATAAATATAATATGAATTGAAAGGATTAATTTGTCAATATCAAATATAATTTCTATCTTGGAATTATATATATATATATATATTAAAAATATACAAAGAAGAAAAATATTAATTTCAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2428#0 --AGTGCTCGAC-ACCGCTGTTTAACAGGCCAGCTATAACTGTCGAGGATTTGCTGAAGG 57 consensus_2428#1 AAATTTCTAAATTACTCCTACTTTAATCGTTTTCTATTTGCAAAAATTATTAAGTTAAAC 60 * * ** * ** ** ** * * **** * *** * ** consensus_2428#0 TGACCCTAAAAAAAGCACCGCAAAACTTTAAGGAGAATAGAAGAAACACGATACCAGGAC 117 consensus_2428#1 TAATTTTTAGAATCAAGCTGTTAGATTTTCTTATCGTCGATTCGTAAGAAGAATTACGTT 120 * * * * ** * * * * *** * * * * consensus_2428#0 CAAAGGGACCCGTCGTTTCCCTAGACATGTTACGCAGTGTGAAATTAAAATCTGCCAGGC 177 consensus_2428#1 GCTAAAGATAATACATTTTTCCAAGTATTTTAAATATTACTTTACTAG--CCGGCCACTC 178 * ** * *** * * ** *** * * * ** * **** * consensus_2428#0 G-CAGAACGACTGATCAAATCATAAGGTCTCCAAGGAGCGGACGAATAATTAAAACGCGT 236 consensus_2428#1 GTCAAAGCGATTA--CAACTTTCACTCTGATCAATTGTTCCTCCAACCCTCGTTGC-CAT 235 * ** * *** * *** * * * *** * ** * * * * consensus_2428#0 ACAGCGCCGAGTCTCAGTTTGTCTCCGATTACGAAAAACTCGGAGAACTCATTGGGTCGA 296 consensus_2428#1 TCAAC--CGAACACTAGGGGGTT----ATTTAAAAATCCCAAGGTGATACATATATCTGT 289 ** * *** ** ** *** *** * * * *** * consensus_2428#0 ATTCTGAAACAGGTGGAAATTAATAAACGTGGCCCAAGGCGTCTATTGTCGAGCTCGTCA 356 consensus_2428#1 GTGAAAAATAAATCGGAAATCTGTCAAAGAGATTT----CTTCT-TCAGCACTTAAATTA 344 * ** * ****** * ** * * * *** * * * * consensus_2428#0 AATTTTCGCGAAAATATTATTGGGAAAGATAATCAATTATCGGGCGTAGATACGAAAAAT 416 consensus_2428#1 ATTTAAAATAAATATAATATGAATTGAAAGGATTAATT------TGTCAATATCAAATAT 398 * ** ** *** *** * * ** **** ** *** *** ** consensus_2428#0 AACAATTCGCAATCTATGACTGCGTTACAGAAGTCGATAATCGTAGATTAAAGGAACATG 476 consensus_2428#1 AATT--------TCTATCTTGGAATTATATATATATATA----TATATTAAAAATATACA 446 ** ***** * *** * * * *** ** ****** * * consensus_2428#0 TTATGTAATAATATTGATATCAGAAATCTTTATGTCGCA-AACTTTAG---TAAATTAAC 532 consensus_2428#1 AAGAAGAAAAATATTAATTTCAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGAC 506 ** ****** ** **** * * * * ** * ** *** ** consensus_2428#0 TTGTTATTTTGTTATTGATTAATCTTGATACATAGATCGGGTTATCTAATATAATATGAT 592 consensus_2428#1 CCGTCGTTTCCTTA---------------------------------------------- 520 ** *** *** consensus_2428#0 GAATAAGAATA 603 consensus_2428#1 ----------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |