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Apis mellifera
cluster # 243 cluster # 243       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_243#0 length = 648 sequences # 4  
 consensus_243#1 length = 436 sequences # 1  
consensusID : consensus_243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 648
fasta sequence 
                              [GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAGGATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA]

[+] EMBL BI510867             [GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACATGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACA                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI502796             [                                            GTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAACTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAGGATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA]
[+] EMBL BI504675             [                                            GTATCCAACTATACCAATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAACTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGA                                                         ]
[+] EMBL BI508029             [                                                                                        GCACAACACGATTGATTAATTGGCCGCCTTACACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACACGGATAACAATGGCATATTGGAAAAACATGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCGGTACAGAGAAGTTGTGTTGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAGGATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA]




>consensus_243#0
GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCA
ATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTAC
ACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACA
CGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTT
TGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGC
TTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCA
TTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTC
CACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACG
GTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACG
TAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAG
GATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA

consensusID : consensus_243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence 
                              [CGTACAGCTGGGATAATCGAGTAGATTTCATTGTAAGATTTCTTTACGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCA]

[+] EMBL BI512529             [CGTACAGCTGGGATAATCGAGTAGATTTCATTGTAAGATTTCTTTACGACACGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTTTGGATGAGGCTTATCA]




>consensus_243#1
CGTACAGCTGGGATAATCGAGTAGATTTCATTGTAAGATTTCTTTACGACACGGATAACA
ATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTTTGATCGAGG
GAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGCTTTCGTTAT
GGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCATTGAAGAGT
TCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTCCACAAGCAA
TGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACGGTGTAATTG
CTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACGTAAATATTT
TGGATGAGGCTTATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_243#0      GATGAAAAATGTCGACCTTTGCCAAAAAGCGAAATACTTGGAGTGTATCCAACTATACCA 60
consensus_243#1      ------------------------------------------------------------
                                                                                 

consensus_243#0      ATGGCAAAATTTCCTTAAAAATAAATTGGCACAACACGATTGATTAATTGGCCGCCTTAC 120
consensus_243#1      ------------------------------------------------------------
                                                                                 

consensus_243#0      ACGCACTAGCTTTTATATTTTAACTCGACTAACGATATGTAATTTCACAATATTTAGACA 180
consensus_243#1      -CGTAC-AGCTGGGATAATC-GAGTAGATTT-CATTGTAAGATTTCT-----TTACGACA 51
                      ** ** ****   *** *   * * ** *  *  * *   *****      **  ****

consensus_243#0      CGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTT 240
consensus_243#1      CGGATAACAATGGCATATTGGAAAAACACGATTTTGAATGCATGGCTCTTAAGATGACTT 111
                     ************************************************************

consensus_243#0      TGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGC 300
consensus_243#1      TGATCGAGGGAAAAGGAGAATTTAGTTACAATCGATATCAAGAGACTTTACATATCATGC 171
                     ************************************************************

consensus_243#0      TTTCGTTGTGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCA 360
consensus_243#1      TTTCGTTATGGGAAGAAATCGCGGAGCTCGCCGATTTCAACAAAGATGACATTGTAACCA 231
                     ******* ****************************************************

consensus_243#0      TTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTC 420
consensus_243#1      TTGAAGAGTTCAAGGAAGCAGTACAGAGAAGTTGTGTCGGGCGAGAATATCAAGATTTTC 291
                     ************************************************************

consensus_243#0      CACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACG 480
consensus_243#1      CACAAGCAATGAAAATGTTTATCGATAGTCATTTTAAGATAGTAGATTTGAATGACGACG 351
                     ************************************************************

consensus_243#0      GTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACG 540
consensus_243#1      GTGTAATTGCTGCCGATGAATTTCGTTACAATTGTGTAACAAGAATTCCTGTGGATAACG 411
                     ************************************************************

consensus_243#0      TAAATATTTTGGATGAGGCTTATCAAAATCTTCTTAATGACGATGACCGGAGACGTGGAG 600
consensus_243#1      TAAATATTTTGGATGAGGCTTATCA----------------------------------- 436
                     *************************                                   

consensus_243#0      GATTAACTTTATCTCGTTATCAAGAACTTTATGCTCAATTTCTTGGTA 648
consensus_243#1      ------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)