cluster # 247

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Apis mellifera
cluster # 247 cluster # 247 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_247#0 length = 473 sequences # 4

consensus_247#1 length = 388 sequences # 1

consensusID : consensus_247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 473
fasta sequence

                              [AATTCAGCGAGTCTCCTGTTTTCGTCGCATTCCCATAAGAGAACTGAGGATCGCGTCGAAAATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAATGACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATATACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATATTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTTTTTCTTACATTTTCTCTTTCCTTTT---TTTCTTTCTTTTTTTTTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTAT--TATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]

[+] EMBL BI510095             [AATTCAGCAAGTCTCCTGTTTTCGTCGCATTCCCATAAGAGAACTGAGGATCGCGTCGAAAATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAATGACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATATACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATATTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTTTTTCTTACATTTTCTCTTTCCTTTTTTCTTTCTTTTTTTTTCTCTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTATTATATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]
[+] EMBL BI503868             [     AGCGAGTCTCCTGTTTTCGTCGCATTCCCATAAGAGAACTGAGGATCGCGTCGAAAATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAATGACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATATACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATATTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTTTTTCTTACATTTTCTCTTTCCTTTT   TTTCTTTCTTTTTTTTTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTAT  TATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]
[+] EMBL BI505975             [                                        GAACTGAGGATCGCGTCGAAAATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAATGACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATATACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATATTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTTTTTCTTACATTTTCTCTTTCCTTTT   TTTCTTTCTTTTTTTTTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTAT  TATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]
[+] EMBL BI502762             [                                        GAACTGAGGATCGCGTCGAAAATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAATGACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATATACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATATTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTTTTTCTTACATTTTCTCTTTCCTTTT   TTTCTTTCTTTTTTTTTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTAT  TATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]




>consensus_247#0
AATTCAGCGAGTCTCCTGTTTTCGTCGCATTCCCATAAGAGAACTGAGGATCGCGTCGAA
AATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAAT
GACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATAT
ACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATA
TTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTT
TTTCTTACATTTTCTCTTTCCTTTTTTTCTTTCTTTTTTTTTCTCTCTCTCTCTTTTTTC
TTTCCTTCCTTCTTTTTTTACTATTATATATATATAAATATATATAAATATATAAATATA
CTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT

consensusID : consensus_247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [TTTTTTCTTGCTCTCTCTCTTTCTCTCTCTCTCTCGCTTCTCTCGCGAATGAATTCAACCCGATCTCGCCGATCGAGAATCGCCGATCGTCGAACCTTCTTTCGTTTTTCCTTTCTTTTTTTTTTCCGTCATCCTCGAGCAGCGAGACAACCACGTATTTCTCGTTCTCTCGACTCGCACGTGCGACAATGTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTTTTCTTTCTTTTTTTTTCTCTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTATTATATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]

[+] EMBL BI503480             [TTTTTTCTTGCTCTCTCTCTTTCTCTCTCTCTCTCGCTTCTCTCGCGAATGAATTCAACCCGATCTCGCCGATCGAGAATCGCCGATCGTCGAACCTTCTTTCGTTTTTCCTTTCTTTTTTTTTTCCGTCATCCTCGAGCAGCGAGACAACCACGTATTTCTCGTTCTCTCGACTCGCACGTGCGACAATGTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTTTTCTTTCTTTTTTTTTCTCTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTATTATATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT]




>consensus_247#1
TTTTTTCTTGCTCTCTCTCTTTCTCTCTCTCTCTCGCTTCTCTCGCGAATGAATTCAACC
CGATCTCGCCGATCGAGAATCGCCGATCGTCGAACCTTCTTTCGTTTTTCCTTTCTTTTT
TTTTTCCGTCATCCTCGAGCAGCGAGACAACCACGTATTTCTCGTTCTCTCGACTCGCAC
GTGCGACAATGTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTTTTCTT
TCTTTTTTTTTCTCTCTCTCTCTCTCTTTTTTCTTTCCTTCCTTCTTTTTTTACTATTAT
ATATATATATAAATATATATAAATATATAAATATACTATGTATAAATTCTTAGATGAATA
TACCAATTTTTACTCGAGCTGCTCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_247#0      AATTCAGCGAGTCTCCTGTTTTCGTCGCATTCCCATAAGAGAACTGAGGATCGCGTCGAA 60
consensus_247#1      ------------------------------------------------------------
                                                                                 

consensus_247#0      AATCGCTTCCGACTTAACGCGATTACGGAAAGCGGAAGCGGAAGATTTTTACGTGCAAAT 120
consensus_247#1      --TTTTTTCTTGCTCTCTCTCTTTCTCTCTCTCTCTCGC--------TTCTCTCGCGAAT 50
                       *   ***   **        **        *    **        **  *  ** ***

consensus_247#0      GACGTGTTTACAAGTCTCTCACCCTATTACATGTAATCCCTCCATACATATAATATATAT 180
consensus_247#1      GA-ATTCAACCCGATCTCGCCGATCGAGAATCGCCGATCGTCGAACCTTCTTTCGTTTTT 109
                     **  *     *   **** *        *   *     * ** *  * * *    * * *

consensus_247#0      ACATACATATATTTTACTATGTATGACATTTTTGCATGATCTTTAAGCAATATTAATATA 240
consensus_247#1      CCTTTCTTTTTTTTTTCCGT------CATCCTCGAGCAGC------GAGACAACCACGTA 157
                      * * * * * **** *  *      ***  * *            *  * *   *  **

consensus_247#0      TTTATGCGCGGCTGCTGCTTGCGAGGCTGGCCGGTATTTCTTCGATAAGACTTCCTTCTT 300
consensus_247#1      TTTCT-CGTTCTCTCGACTCGCACGTGCGACAATGTTTTCTTTTCTT---TTCTTTTCTT 213
                     *** * **      *  ** **  *   * *     ******   *     *   *****

consensus_247#0      TTTCTTACATTTTCTCTTTCCTTTTTTTCTTTCTTTTTTTTTCTCTCTCTCTCTTTTTTC 360
consensus_247#1      TTCTTTTCTTTTCTTTCCTTTTTTCTTTCTTTTTTTTTCTCTCTCTCTCTCTCTTTTTTC 273
                     **  ** * ***  *   *  *** ******* ***** * *******************

consensus_247#0      TTTCCTTCCTTCTTTTTTTACTATTATATATATATA--AATATATATAAATATATAAATA 418
consensus_247#1      TTTCCTTCCTTCTTTTTTTACTATTATATATATATATAAATATATATAAATATATAAATA 333
                     ************************************  **********************

consensus_247#0      TACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT 473
consensus_247#1      TACTATGTATAAATTCTTAGATGAATATACCAATTTTTACTCGAGCTGCTCGATT 388
                     *******************************************************

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)