These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAATGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCGTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCACATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAGCAAATTTTTATACATTAATGTGTCACGAAATAAATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCAGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT] [+] EMBL BI512055 [GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAATGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCGTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCACATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAA ] [+] EMBL BI516531 [ AGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTAAATATGCATTTTTTTATACATTAATGTGTCACGAAATAAATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCAGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT] consensusID : consensus_258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCCTGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGATATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACCTGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGA] [+] EMBL BI510119 [CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCCTGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGATATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACCTGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGA] consensusID : consensus_258#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATAATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAGACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT] [+] EMBL BI512726 [GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTGTCCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGGTGGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATAATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAGACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT] [+] EMBL BI506649 [ ACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_258#0 GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAA 60 consensus_258#1 ------------------------------------------------------------ consensus_258#2 ------------------------------------------------------------ consensus_258#0 TGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACT-TTTCATGGTTTTCC 119 consensus_258#1 --------------------------------------CTGCGCTGCTCCATCGTTTATC 22 consensus_258#2 ------------------------------------------------------------ consensus_258#0 GTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGA--CCTGTGATTTGGTCATACTTTGC 177 consensus_258#1 GTC------GCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGC 76 consensus_258#2 ------------------------------------------------------------ consensus_258#0 CGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGAC 237 consensus_258#1 GGAA---------GATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAAT 127 consensus_258#2 ------------------------------------------------------------ consensus_258#0 ACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTAT 297 consensus_258#1 ACTGGCAAATCGCGTGATAGTTA-TACGGTGAAAGAATTAATTTTAAATGACATCCG--- 183 consensus_258#2 ---GTACACTTTCATCAGGACTT-TGCGCGATCGGATTATATTTTGTATACAATAAGCAT 56 * * * * * * ** ** ** * consensus_258#0 CACATATTCAGCGT-TCACGTATAAT--TCTTGGCGAATCTTCCTGCTGATCTGCGCTGC 354 consensus_258#1 ---AGAACCGGAAC-TGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCG 239 consensus_258#2 C--ATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAA--ATGCAGC 112 * * * * * ** ** * ** * ** consensus_258#0 TC--CATCGTTTATCGTCGCGGG--GCTGCTCCTGTTGCT----CCCTGAATCTCCTAAA 406 consensus_258#1 CCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGA 299 consensus_258#2 TCTAGACTGTT--TAATAACCGA--AGTTTTCCCGACACCT---CTTCGCGCAACAGGAA 165 * * ** * * * ** * * * * * consensus_258#0 TACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCC 466 consensus_258#1 TTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTC 359 consensus_258#2 TTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGA-ATTATTGG-TAACATCGTAATATC 223 * * ** * * ** * * * consensus_258#0 ATTAATACTGGCAAATCGCGT-GAT-AGTTATACGGTGAAAGAGCAAATTTTTATACATT 524 consensus_258#1 CTGAAT--TATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTC 417 consensus_258#2 TCAACTCTTGGATA--TGTATTNNNCAGCACCAACTT--TTATC--GTTGCTGCACTTTT 277 * * * * * * ** * * * * consensus_258#0 AATGTGTCACGAAAT-AAATATTTATTACAAATAAAAGCATCGAAA----AAAATTACAA 579 consensus_258#1 GATATGTCAAGTGACCGAATACGTGGTTCAAA-GAGGTTCTCAAAATATCAAGACTGTTT 476 consensus_258#2 AATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTG 337 ** * ** * * * * * * * consensus_258#0 TTTTCAATGAATTT--TATTTCAG-----GTGAAAGAATTAATTTTAAATGACATCCGAG 632 consensus_258#1 GTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCG-TAGCATCCG-- 533 consensus_258#2 ACATCGGTGAAAACT-TGCATCAGAT----CGAATAAATTGATGTACAGTCATATACA-- 390 * * ** ** * * * ** ** * ** * consensus_258#0 AACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATA 692 consensus_258#1 ---CTATACCTGCAAATATTATTGCTGTTCTAGG--AATGGATCGTCTTGGCCGTAAATT 588 consensus_258#2 --CATAAAATTGAAAAACTTATCACGTTTATAAT--AACAAATTGTG-CGTTCATGTATT 445 * ** ** ** * * * ** consensus_258#0 TCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAA 752 consensus_258#1 TTTCT--TATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTAT-ATTTTGT 645 consensus_258#2 TGTTC------ATTTAATTCATAATAATCGAATCATT-CTAGACAACAT----ACATTGC 494 * * * ** * * * * * * consensus_258#0 TTATTATTAATTTCACTTTT------ 772 consensus_258#1 ATACAATAAGCATCATAATCTGA--- 668 consensus_258#2 GGCGATTGAGCATCACATTCCTGTTT 520 * * *** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |