Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 258 cluster # 258       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_258#0 length = 772 sequences # 2  
consensus_258#1 length = 668 sequences # 1  
consensus_258#2 length = 520 sequences # 2  

consensusID : consensus_258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence
                              [GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAATGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCGTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCACATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAGCAAATTTTTATACATTAATGTGTCACGAAATAAATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCAGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT]

[+] EMBL BI512055             [GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAATGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCGTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCACATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAA                                                                                                                                                                                                                                                                    ]
[+] EMBL BI516531             [                                                                                                                                                                                                                                                                                                                  AGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTAAATATGCATTTTTTTATACATTAATGTGTCACGAAATAAATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCAGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT]


>consensus_258#0 GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAA TGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACTTTTCATGGTTTTCCG TTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGACCTGTGATTTGGTCATACTTTGCCGA ATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGACACT TGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTATCAC ATATTCAGCGTTCACGTATAATTCTTGGCGAATCTTCCTGCTGATCTGCGCTGCTCCATC GTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTG CGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAA ATCGCGTGATAGTTATACGGTGAAAGAGCAAATTTTTATACATTAATGTGTCACGAAATA AATATTTATTACAAATAAAAGCATCGAAAAAAATTACAATTTTCAATGAATTTTATTTCA GGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGA AAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGT CTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTT



consensusID : consensus_258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence
                              [CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCCTGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGATATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACCTGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGA]

[+] EMBL BI510119             [CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACATCCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCCTGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGATATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACCTGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGA]


>consensus_258#1 CTGCGCTGCTCCATCGTTTATCGTCGCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAA ATACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGC CATTAATACTGGCAAATCGCGTGATAGTTATACGGTGAAAGAATTAATTTTAAATGACAT CCGAGAACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGC CGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGAT TTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTCC TGAATTATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTCGAT ATGTCAAGTGACCGAATACGTGGTTCAAAGAGGTTCTCAAAATATCAAGACTGTTTGTTC CGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCGTAGCATCCGCTATACC TGCAAATATTATTGCTGTTCTAGGAATGGATCGTCTTGGCCGTAAATTTTTCTTATTGTT TAGTACACTTTCATCANNACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCA TAATCTGA



consensusID : consensus_258#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 520
fasta sequence
                              [GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATAATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAGACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT]

[+] EMBL BI512726             [GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTGTCCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGGTGGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATAATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAGACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT]
[+] EMBL BI506649             [                ACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACTGTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGTATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAGATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGT                                                                                                         ]


>consensus_258#2 GTACACTTTCATCAGGACTTTGCGCGATCGGATTATATTTTGTATACAATAAGCATCATA ATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAAATGCAGCTCTAGACT GTTTAATAACCGAAGTTTTCCCGACACCTCTTCGCGCAACAGGAATTGCCATTTCTATGG TTGCAGCGCGCCTCGGTGGAATTATTGGTAACATCGTAATATCTCAACTCTTGGATATGT ATTNNNCAGCACCAACTTTTATCGTTGCTGCACTTTTAATCGNNNGAGGATTATTATGTT TATTCTTACCAAATACAACACGGGAACCACTTTCTTGACATCGGTGAAAACTTGCATCAG ATCGAATAAATTGATGTACAGTCATATACACATAAAATTGAAAAACTTATCACGTTTATA ATAACAAATTGTGCGTTCATGTATTTGTTCATTTAATTCATAATAATCGAATCATTCTAG ACAACATACATTGCGGCGATTGAGCATCACATTCCTGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_258#0      GGGCTCCATCGCGGACGCCTTAGGTCGACGGAAAGTTCTTATCGCCATCTCCTTCATAAA 60
consensus_258#1      ------------------------------------------------------------
consensus_258#2      ------------------------------------------------------------
                                                                                 

consensus_258#0      TGCCCTTTGCATTGTCGCCTCCAGCTTCAGCCAATCTTATGCACT-TTTCATGGTTTTCC 119
consensus_258#1      --------------------------------------CTGCGCTGCTCCATCGTTTATC 22
consensus_258#2      ------------------------------------------------------------
                                                                                 

consensus_258#0      GTTTTCTCAACGGTGCTGCTCTTGGAGGTAGCGGA--CCTGTGATTTGGTCATACTTTGC 177
consensus_258#1      GTC------GCGGGGCTGCTCCTGTTGCTCCCTGAATCTCCTAAATACCTCTTATCCTGC 76
consensus_258#2      ------------------------------------------------------------
                                                                                 

consensus_258#0      CGAATTCCAACCAAAATCGAAGCGAGGATCGATGTTGTCCTTCATGGCTGCCTTTTGGAC 237
consensus_258#1      GGAA---------GATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCCATTAAT 127
consensus_258#2      ------------------------------------------------------------
                                                                                 

consensus_258#0      ACTTGGAAACCTCTTTGTTGCTGGTTTGGCGTGGTTGATCATCCCTCATGATATCGGTAT 297
consensus_258#1      ACTGGCAAATCGCGTGATAGTTA-TACGGTGAAAGAATTAATTTTAAATGACATCCG--- 183
consensus_258#2      ---GTACACTTTCATCAGGACTT-TGCGCGATCGGATTATATTTTGTATACAATAAGCAT 56
                            *    * *      *  *  *            **     **   **  *   

consensus_258#0      CACATATTCAGCGT-TCACGTATAAT--TCTTGGCGAATCTTCCTGCTGATCTGCGCTGC 354
consensus_258#1      ---AGAACCGGAAC-TGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCG 239
consensus_258#2      C--ATAATCTGATCGTTTCGGCTATCTTCAGCGGTGTGATAAGCTGTGGAA--ATGCAGC 112
                        * *  * *    *  **  **        *           **   *     **   

consensus_258#0      TC--CATCGTTTATCGTCGCGGG--GCTGCTCCTGTTGCT----CCCTGAATCTCCTAAA 406
consensus_258#1      CCGATATCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGA 299
consensus_258#2      TCTAGACTGTT--TAATAACCGA--AGTTTTCCCGACACCT---CTTCGCGCAACAGGAA 165
                      *   *  **      *  *       *  **      *     *   *     *    *

consensus_258#0      TACCTCTTATCCTGCGGAAGATACGAGGAGGCGCTCGATATCTTCCGTGGAATTTATGCC 466
consensus_258#1      TTTCAATTATTATTAATTTCACTTTTCACATCGGTTATTACGGTCTAATGATGTGGTTTC 359
consensus_258#2      TTGCCATTTCTATGGTTGCAGCGCGCCTCGGTGGA-ATTATTGG-TAACATCGTAATATC 223
                     *  *  **    *                   *     **             *  *  *

consensus_258#0      ATTAATACTGGCAAATCGCGT-GAT-AGTTATACGGTGAAAGAGCAAATTTTTATACATT 524
consensus_258#1      CTGAAT--TATTCAATCGTTTCGACGAGTTTCATCGTGATCATCCAAATGAAATCGCTTC 417
consensus_258#2      TCAACTCTTGGATA--TGTATTNNNCAGCACCAACTT--TTATC--GTTGCTGCACTTTT 277
                        * *  *    *   *  *     **    *   *           *         * 

consensus_258#0      AATGTGTCACGAAAT-AAATATTTATTACAAATAAAAGCATCGAAA----AAAATTACAA 579
consensus_258#1      GATATGTCAAGTGACCGAATACGTGGTTCAAA-GAGGTTCTCAAAATATCAAGACTGTTT 476
consensus_258#2      AATCGNNNGAGGATTATTATGTTTATTCTTACCAAATACAACACGGGAACCACTTTCTTG 337
                      **       *       **   *  *   *   *      *         *   *    

consensus_258#0      TTTTCAATGAATTT--TATTTCAG-----GTGAAAGAATTAATTTTAAATGACATCCGAG 632
consensus_258#1      GTTCCGATAAAATTGGCGCTTCCGTTTTTATGGAATCGTTAATTACCG-TAGCATCCG-- 533
consensus_258#2      ACATCGGTGAAAACT-TGCATCAGAT----CGAATAAATTGATGTACAGTCATATACA-- 390
                         *  * **         ** *       * *    ** **      *   ** *   

consensus_258#0      AACCGGAACTGACGAATAGTAGTATCGAAAAGAACAAATGCAAAACAATGCTCGCCGATA 692
consensus_258#1      ---CTATACCTGCAAATATTATTGCTGTTCTAGG--AATGGATCGTCTTGGCCGTAAATT 588
consensus_258#2      --CATAAAATTGAAAAACTTATCACGTTTATAAT--AACAAATTGTG-CGTTCATGTATT 445
                            *      **   **               **   *       *  *    ** 

consensus_258#0      TCGTAAACAATAGCAAACAACTCTTCGTCTCGCCTATACTTCGTTTCACCATGATTTCAA 752
consensus_258#1      TTTCT--TATTGTTTAGTACACTTTCATCANNACTTTGCGCGATCGGATTAT-ATTTTGT 645
consensus_258#2      TGTTC------ATTTAATTCATAATAATCGAATCATT-CTAGACAACAT----ACATTGC 494
                     *              *        *  **    *  * *        *     *  *   

consensus_258#0      TTATTATTAATTTCACTTTT------ 772
consensus_258#1      ATACAATAAGCATCATAATCTGA--- 668
consensus_258#2      GGCGATTGAGCATCACATTCCTGTTT 520
                           * *   ***   *       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)