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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2663 cluster # 2663       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2663#0 length = 567 sequences # 1  
consensus_2663#1 length = 403 sequences # 1  

consensusID : consensus_2663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence
                              [CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAGGAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATATTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAACATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTCGAGAAATTCCATCTCATGTATTACAAA]

[+] EMBL BI504775             [CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAGGAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATATTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAACATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTCGAGAAATTCCATCTCATGTATTACAAA]


>consensus_2663#0 CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAG GAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATG AGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATG CGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATA TTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAA CATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGG AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTC GAGAAATTCCATCTCATGTATTACAAA



consensusID : consensus_2663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATGTGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG]

[+] EMBL BI502898             [TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATGTGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG]


>consensus_2663#1 TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATAGGACACAAACATGTCAAATGATG TGAACACCCAAGCTGATAAGCCCAATGAGGACGAAAATATCGATAAAGCAGAAGAAGAAG AAGGCACTTCGTCTATTGATCTGCATGCGCAGGAAAGTGGAATTATATACGGAGGTTGTG AAGGACCAAATGCAATGTATGTAAAACTTGTTAGCAGTGATGGACATGAATTTATTGTTA AACGTGAACATGCTTTAACTAGTGGAACAATAAAAGCAATGTTAAGTGGTCCTGGACAGT TTGCAAAAAATGAAGCTAATGAAGTTAATTTTCGNGAAATTCCATCTCATGTATTACAAA AGGTTTGCATGTATTTTACCTACAAAGTACGCTATACAAATAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2663#0      CTTTACAATTGGGCTGCTATCATAACTGCAATTTTATTAATTCTTCTAATTGGAAAACAG 60
consensus_2663#1      ------------------------------------------------------------
                                                                                  

consensus_2663#0      GAAAATTATAGTAAACAGTTTGTTGATTAATGCTAATTTTTCTTTGGATCAAGCCCAATG 120
consensus_2663#1      ------------------------------------------------------------
                                                                                  

consensus_2663#0      AGGACGAAAATATCGATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATG 180
consensus_2663#1      ------------------------------------------------------------
                                                                                  

consensus_2663#0      CGGTACCTATTTCTGCAAATTAAAATTTTGCTGCTTAATGATCTTTTTCTGTTTTTTATA 240
consensus_2663#1      -----------------------TTTTTTTTTTTTCGTTGAGAAATATAAATATTCTATA 37
                                               ****  *  *   ***    * *   * ** ****

consensus_2663#0      TTCCTTGTCTTTCATTACTAACAGTAGGATAGTTGTATGGTAGTTAAAATATTAACTCAA 300
consensus_2663#1      GGACACAAACATGTCAAATGATGTGAACACCCAAGC-TGATAAGCCCAATGAGGACGAAA 96
                         *       *    * * *    *  *     *  ** **     ***    **  **

consensus_2663#0      CATATCATAAATAACATAATACAATATAATGTATAAGTTTTGGGATAAACTTTTAGCAGG 360
consensus_2663#1      -ATATCG-ATAAAGCAGAAGAAGAAGAAGGCACTTCGTCTATTGATCTGCATGC-GCAGG 153
                       *****  * * * ** ** *  *   *     *  ** *   ***   * *   *****

consensus_2663#0      AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA 420
consensus_2663#1      AAAGTGGAATTATATACGGAGGTTGTGAAGGACCAAATGCAATGTATGTAAAACTTGTTA 213
                      ************************************************************

consensus_2663#0      GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA 480
consensus_2663#1      GCAGTGATGGACATGAATTTATTGTTAAACGTGAACATGCTTTAACTAGTGGAACAATAA 273
                      ************************************************************

consensus_2663#0      AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAGAAAATGAAGCTAATGAAGTTAATTTTC 540
consensus_2663#1      AAGCAATGTTAAGTGGTCCTGGACAGTTTGCAAAAAATGAAGCTAATGAAGTTAATTTTC 333
                      ******************************** ***************************

consensus_2663#0      GAGAAATTCCATCTCATGTATTACAAA--------------------------------- 567
consensus_2663#1      GNGAAATTCCATCTCATGTATTACAAAAGGTTTGCATGTATTTTACCTACAAAGTACGCT 393
                      * *************************                                 

consensus_2663#0      ----------
consensus_2663#1      ATACAAATAG 403
                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)