cluster # 2681

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Apis mellifera
cluster # 2681 cluster # 2681 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2681#0 length = 439 sequences # 1

consensus_2681#1 length = 430 sequences # 1

consensusID : consensus_2681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTTTATTAAAAAAAAGATAAGGACAAAGAAATTGTTGCTCACTTAACAGAAATGGGAAGACCTTCGGGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACTAGTTCACCGTCCACTAATTTCAGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAGAACCTCGAGCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTTTCACCGGTGCAGTGCCACGTGCCAAGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAATGATCGTACGTGTACACTTTATGAAAATTA]

[+] EMBL BI511372             [ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTTTATTAAAAAAAAGATAAGGACAAAGAAATTGTTGCTCACTTAACAGAAATGGGAAGACCTTCGGGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACTAGTTCACCGTCCACTAATTTCAGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAGAACCTCGAGCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTTTCACCGGTGCAGTGCCACGTGCCAAGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAATGATCGTACGTGTACACTTTATGAAAATTA]




>consensus_2681#0
ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTTTAT
TAAAAAAAAGATAAGGACAAAGAAATTGTTGCTCACTTAACAGAAATGGGAAGACCTTCG
GGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACTAGTTCACCGTCCACTAATTTC
AGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGA
CGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAGAACCTCGA
GCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTTTCACCGGTGCAGTGCCACGTGCCA
AGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAATGATCGTACGT
GTACACTTTATGAAAATTA

consensusID : consensus_2681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GGGATCACTGACTTACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTAAAATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAAGAGATCATGATGTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAACAAAAAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTGAATTAGAAGTATAATCGGAAGAAGCTAATAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTATCACCATTTGCGACGCCGGTACCAAACTTAAAGCTGGCTCTATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAACATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACG]

[+] EMBL BI512758             [GGGATCACTGACTTACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTAAAATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAAGAGATCATGATGTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAACAAAAAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTGAATTAGAAGTATAATCGGAAGAAGCTAATAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTATCACCATTTGCGACGCCGGTACCAAACTTAAAGCTGGCTCTATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAACATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACG]




>consensus_2681#1
GGGATCACTGACTTACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTAA
AATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAAGAGATCATGAT
GTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAACA
AAAAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTGAATTAGAAGTATAATCGGAA
GAAGCTAATAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTATCACCATTTGCGA
CGCCGGTACCAAACTTAAAGCTGGCTCTATTTCCATTTTCATCGGCCTCGTATCTTGAAA
GATATACAAACATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTG
AAATCGGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2681#0      ---ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTT 57
consensus_2681#1      GGGATCACTGACTT-ACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTA 59
                         **  *    ** *        * **** *     *      *   * ***  *  * 

consensus_2681#0      TATTAAAAAAAAGATAAGGACAAAGAA-ATTGTTGCTCACTTAACAGAAATGGGAAGACC 116
consensus_2681#1      AAATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAA-GAGATCATG 118
                       * ***  ** *  *  * * *   ** ** * *      **     *** * **  *  

consensus_2681#0      TTCGGGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACT----AGTTCACCGTCCA 172
consensus_2681#1      ATGTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAA 178
                       *   *  ** *   * * **  *    ** * * **  *  *    * *  *   ** *

consensus_2681#0      CTAATTTCAGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTG 232
consensus_2681#1      CAAA---AAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTG----AATTAGAAGTA 231
                      * **    *  ****   *      * **    * **     * *    * *** *  * 

consensus_2681#0      AAATCGGACGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAG 292
consensus_2681#1      TAATCGGAAGAAGCTAA---TAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTAT 288
                       ******* **  *      * **  * **     ** * * *  **    * * *  * 

consensus_2681#0      AACCTCGAGCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTT-TCACCGGTGCAGT-- 349
consensus_2681#1      CACCATTTGCGA-CGCCGGTACC---AAACTTAAAGCTGGCTCTATTTCCATTTTCATCG 344
                       ***    **** *   *** *      *     ** *  ** * *  **  *    *  

consensus_2681#0      GCCACGTGCCAAGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAA 409
consensus_2681#1      GCCTCGTATCTTGAAAGATATACAAACATTTCCGTTTCCTCTTTTTGCAC-GTTATTCAC 403
                      *** ***  *  ***  **   * *  *  ** *     **  *** **  * *  * * 

consensus_2681#0      TGATCGTACGTGTACACTTTATGAAAATTA 439
consensus_2681#1      CG---GTGCATTTACATTTGAAATCGGACG 430
                       *   ** * * **** ** *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)