These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTTTATTAAAAAAAAGATAAGGACAAAGAAATTGTTGCTCACTTAACAGAAATGGGAAGACCTTCGGGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACTAGTTCACCGTCCACTAATTTCAGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAGAACCTCGAGCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTTTCACCGGTGCAGTGCCACGTGCCAAGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAATGATCGTACGTGTACACTTTATGAAAATTA] [+] EMBL BI511372 [ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTTTATTAAAAAAAAGATAAGGACAAAGAAATTGTTGCTCACTTAACAGAAATGGGAAGACCTTCGGGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACTAGTTCACCGTCCACTAATTTCAGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAGAACCTCGAGCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTTTCACCGGTGCAGTGCCACGTGCCAAGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAATGATCGTACGTGTACACTTTATGAAAATTA] consensusID : consensus_2681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [GGGATCACTGACTTACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTAAAATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAAGAGATCATGATGTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAACAAAAAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTGAATTAGAAGTATAATCGGAAGAAGCTAATAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTATCACCATTTGCGACGCCGGTACCAAACTTAAAGCTGGCTCTATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAACATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACG] [+] EMBL BI512758 [GGGATCACTGACTTACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTAAAATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAAGAGATCATGATGTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAACAAAAAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTGAATTAGAAGTATAATCGGAAGAAGCTAATAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTATCACCATTTGCGACGCCGGTACCAAACTTAAAGCTGGCTCTATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAACATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTGAAATCGGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2681#0 ---ATTTCCATTTTCATCGGCCTCGTATCTTGAAAGATATACAAAGTAAGAAAAAAATTT 57 consensus_2681#1 GGGATCACTGACTT-ACTTTAAAAGCATCTAGGTTATTGCGTTGACCGATAAATTATGTA 59 ** * ** * * **** * * * * *** * * consensus_2681#0 TATTAAAAAAAAGATAAGGACAAAGAA-ATTGTTGCTCACTTAACAGAAATGGGAAGACC 116 consensus_2681#1 AAATAATTAAGAAGTGTGAATATGAAATATCGATAAAATTTTTGTTAAAA-GAGATCATG 118 * *** ** * * * * * ** ** * * ** *** * ** * consensus_2681#0 TTCGGGGCTTTTATAAGAGAAGCTTCCTTTTACAGTTCGCACT----AGTTCACCGTCCA 172 consensus_2681#1 ATGTTGAATTGTGAGAAAAAATTTATAATTCAAAATTTACTTTTTGAAATATAAGATCAA 178 * * ** * * * ** * ** * * ** * * * * * ** * consensus_2681#0 CTAATTTCAGCATTTCCGTTTCCTCTTTTTGCACGTTATTCACCGGTGCATTTACATTTG 232 consensus_2681#1 CAAA---AAATATTTTTATCCAAAATATTAAAGCATTGAAAGCTG----AATTAGAAGTA 231 * ** * **** * * ** * ** * * * *** * * consensus_2681#0 AAATCGGACGATTCCTGGCTTTATTGTCCTCGAAGGGCGTATTCAAGATCAATCCACCAG 292 consensus_2681#1 TAATCGGAAGAAGCTAA---TAATAATTCTATTGTGGTGAACTAGAGGAAGAACGATTAT 288 ******* ** * * ** * ** ** * * * ** * * * * consensus_2681#0 AACCTCGAGCGAACAGAGGTGCTTTTTGATCGGGAGATAACTTT-TCACCGGTGCAGT-- 349 consensus_2681#1 CACCATTTGCGA-CGCCGGTACC---AAACTTAAAGCTGGCTCTATTTCCATTTTCATCG 344 *** **** * *** * * ** * ** * * ** * * consensus_2681#0 GCCACGTGCCAAGAATCATTAGCCAGAAAATCTGGAGAATCCATTTACAAAGATGATTAA 409 consensus_2681#1 GCCTCGTATCTTGAAAGATATACAAACATTTCCGTTTCCTCTTTTTGCAC-GTTATTCAC 403 *** *** * *** ** * * * ** * ** *** ** * * * * consensus_2681#0 TGATCGTACGTGTACACTTTATGAAAATTA 439 consensus_2681#1 CG---GTGCATTTACATTTGAAATCGGACG 430 * ** * * **** ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |