These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTTTTCCCTTTTTTCCCTACTTATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCTCTTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTTCCCGATAAACTTTTCTCATAGTCAACATGTCTCGTATAAACTATGCAGTGCCGATGCCTATCAAATAGGCAAGTACACATAAAATATATGGTAATCGACAAGTGAGTAACATTAAAATTAGAAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAAGCATCTCGCGAACCTACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTGTCTCTTTTTCTTCGTCGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTANNTAAAGAAATGTCTTCCACTTTTTCACGCGACATTTT] [+] EMBL BI502805 [CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTTTTCCCTTTTTTCCCTACTTATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCTCTTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTTCCCGATAAACTTTTCTCATAGTCAACATGTCTCGTATAAACTATGCAGTGCCGATGCCTATCAAATAGGCAAGTACACATAAAATATATGGTAATCGACAAGTGAGTAACATTAAAATTAGAAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAAGCATCTCGCGAACCTACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTGTCTCTTTTTCTTCGTCGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTANNTAAAGAAATGTCTTCCACTTTTTCACGCGACATTTT] consensusID : consensus_2712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTAGATAAAGAAATGTCTTCCACTTTTTCACGCGACATTTTCAAACAATTTGACTATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATCTTTGGTAAGTTTTATATATAGGCAACAATTTTGATTTCTCGGTTAATTTTTATTTTTGATGACTTAATATCCTTACTTGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAATTTATCAAAATAATTAAATAATTATTTTTCTGCTGTAAAAATAATCTCACTTTCACTGGTGACTTTATGATTACAATGGATTATATTAATGATACAAATAGGATGCATTTTTAAGTCAATAAAAATTAAGTACATTGTTCATACTAATAAAAAAATTCTTAAAGTACTATCACTTTTCATTCAATTTCATGAATAAAAAAACTTAACCTAACTTTTTTGAAACACTTTGTATAACGTTAAACGTAACGAAGAAAAG] [-] EMBL BI512286 [AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGCGTGATGGCGATGAGGTAGATAAAGAAATGTCTTCCACTTTTTCACGCGACATTTTCAAACAATTTGACTATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATCTTTGGTAAGTTTTATATATAGGCAACAATTTTGATTTCTCGGTTAATTTTTATTTTTGATGACTTAATATCCTTACTTGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAATTTATCAAAATAATTAAATAATTATTTTTCTGCTGTAAAAATAATCTCACTTTCACTGGTGACTTTATGATTACAATGGATTATATTAATGATACAAATAGGATGCATTTTTAAGTCAATAAAAATTAAGTACATTGTTCATACTAATAAAAAAATTCTTAAAGTACTATCACTTTTCATTCAATTTCATGAATAAAAAAACTTAACCTAACTTTTTTGAAACACTTTGTATAACGTTAAACGTAACGAAGAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2712#0 CCTTCCCTTTTAAATTCTTTCCAATCATTTTTGTCATATTTT-TTCCCTTTTTTCCCTAC 59 consensus_2712#1 --------AACAATGCTAATCCAANCGTTTCTTTCATTTCGTATTTACTTGGTTCAACGC 52 ** ***** * *** * **** * * ** *** *** * consensus_2712#0 TTATTTATGTACAACACATTTAACATTTTATCAGCTTTCTTTATATTTTTTTTTTCTTCT 119 consensus_2712#1 GTGATGGCG-ATGAGGTAGATAAAGAAATGTC--------TTCCACTTTTTCACGCGACA 103 * * * * * * *** * ** ** * ***** * * consensus_2712#0 CTTCTATAACTCTCTTCCTTCTTCTCTTATTACTCTTCTTCGACTTACACCCTTCACTTT 179 consensus_2712#1 TTTTCAAACAATTTGACTATTTTTATTTATTAAATATATTTCATCTTGCTTCTTCGAATC 163 ** * * * * * ** ****** * ** * * **** * consensus_2712#0 CCCGATAAACTTTTCTCATAGTCAACA-------TGTCTCGTATAAACTATGCAGTGCCG 232 consensus_2712#1 TTTGGTAAGTTTTATATATAGGCAACAATTTTGATTTCTCGGTTAATTTTTAT--TTTTG 221 * *** *** **** ***** * ***** *** * * * * consensus_2712#0 ATGCCTATCAAATAGGCAAGTACACATAAAATATAT-GGTAATCGA---CAAGTGAGTAA 288 consensus_2712#1 ATGACT-TAATATCCTTACTTGCGTACAAAGTGTTTCAAAAATTAATTTCTATAAAATAA 280 *** ** * * ** * * * * *** * * * *** * * * * *** consensus_2712#0 C--ATTAAAATTAGAAAGTACATGTCGCAACATGGTGGACGATAGATAGAGACAGAAGAA 346 consensus_2712#1 TTTATCAAAATAATTAAATAATTATTTTTCTGCTGTAAA-AATAATCTCACTTTCACTGG 339 ** ***** * ** ** * * ** * *** * * consensus_2712#0 GCATCTCGCGAAC-CTACACATTTTTTTCTTGCCCCGGCCTTGGACCACTCGTCTTTTTG 405 consensus_2712#1 TGACTTTATGATTACAATGGATTATATTAATGATACAAATAGGATGCATTTTTAAGTCAA 399 * * ** * * *** * ** ** * * ** * * * consensus_2712#0 TCTCTTTTTCTTCGTCGTAATCGTTGCAAACAATGCTAATCCAACCGTTTCTTTCATTTC 465 consensus_2712#1 TAAAAATTAAGT--ACATTGTTCATACTAATAAAAAAATTCTTAAAGTA-CTATCACTTT 456 * ** * * * * * * ** ** * ** * ** ** *** ** consensus_2712#0 GTATTTACTTGGTTCAACGCGTGATGGCGATG-AGGTANNTAAAGAAATGTCTTCCACTT 524 consensus_2712#1 TCATTCAATTTCATGAATAAAAAAACTTAACCTAACTTTTTTGAAACACTTTGTATAACG 516 *** * ** * ** * * * * * * * * * * * consensus_2712#0 TTTCACGCGACATTTT---- 540 consensus_2712#1 TTAAACGTAACGAAGAAAAG 536 ** *** ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |