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Apis mellifera
cluster # 276 cluster # 276       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_276#0 length = 655 sequences # 4  
 consensus_276#1 length = 582 sequences # 1  
consensusID : consensus_276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 655
fasta sequence 
                              [GGAATAGGCAAATAAAGGGGGAATGAAAGAGAGCAAAAAAGTGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCAT-GGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGACAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATAAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAG----ATGTGTGTGTGTATACAGGGTGATTCTAGAGATCAGAATAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAACTGTCAATCATTACAACGATGATTTTCAAAGTGAAAGGAGTAATATATTTTAGAGAATAGTTGTAAGAAATATTTAAAGTCGCATACTTTATTGAAAACTGAAAGAATTATAATATCTTTGCACGAAAAATGGAAATCTAATTCTAGATTTGAAAGGAAAGATAAAGAATGGTTTT]

[+] EMBL BI509740             [GGAATAGGCAAATAAAGGGGGAATGAAAGAGAGCAAAAAAGTGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCAT GGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGACAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATAAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAG    ATGTGTGTGTGTATACAGGGTGATTCTAGAGATCAGAATAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAACTGTCAATCATTACAACGATGATTTTCAAAGTGAAAGGAGTAATATATTTTAGAGAATAGTTGTAAGAAATATTTAAAGTCGCATACTTTATTGAAAACTGAAAGAATTATAATATCTTTGCACGAAAAATGGAAATCTAATTCTAGA                            ]
[+] EMBL BI507405             [GGAATAGGCAAATAAAGGGGGAATGAAAGAGAGCAAAAAAGTGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCATNNNNTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGGCAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGGGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATGAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAGGTGTGTGTGTGTGTGTATACAGAGTGATTCTAGAGATCAGAACAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAAC GTCGATCATTACAACGATGTTTCCCAAAGTGAAAGGA                                                                                                                                         ]
[+] EMBL BI505677             [                                         TGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCAT GGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGACAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATAAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAG    ATGTGTGTGTGTATACAGGGTGATTCTAGAGATCAGAATAACGAAAATTAATCGAAAATTTCTTAACCNNGGCAACTGTCAATCATTACAACGATGATTTTCAAAGTGAAAGGAGTAATATATTTTAGAGAATAGTTGTAAGAAATATTTAAAGTCGCATACTTTATTGAAAACTGAAAGAATTATAATATCTTTGCACGAAAAATGGAA                                         ]
[+] EMBL BI509787             [                                                                  TTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCAT GGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGACAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATAAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAG    ATGTGTGTGTGTATACAGGGTGATTCTAGAGATCAGAATAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAACTGTCAATCATTACAACGATGATTTTCAAAGTGAAAGGAGTAATATATTTTAGAGAATAGTTGTAAGAAATATTTAAAGTCGCATACTTTATTGAAAACTGAAAGAATTATAATATCTTTGCACGAAAAATGGAAATCTAATTCTAGATTTGAAAGGAAAGATAAAGAATGGTTTT]




>consensus_276#0
GGAATAGGCAAATAAAGGGGGAATGAAAGAGAGCAAAAAAGTGTTCGTGCGAGGTAGCCG
CTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCATGGCTTGAAAATT
ATCCACCCGAGCGAAGTAGACACATCGTCGGACAATTAGATCACGACCGATCGCACAACC
CGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAG
GCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCG
CATCGACTAATAAATCGGCGATAACGAGAATAAAATAACAGCCTGGGGGCATAAAGGTGT
TGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAGATGTGTGTGTGTATAC
AGGGTGATTCTAGAGATCAGAATAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAAC
TGTCAATCATTACAACGATGATTTTCAAAGTGAAAGGAGTAATATATTTTAGAGAATAGT
TGTAAGAAATATTTAAAGTCGCATACTTTATTGAAAACTGAAAGAATTATAATATCTTTG
CACGAAAAATGGAAATCTAATTCTAGATTTGAAAGGAAAGATAAAGAATGGTTTT

consensusID : consensus_276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence 
                              [AAAGTGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCATGGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGGCAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATGAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCNNNAATAGGTGTGTGTGTGTGTGTATACAGAGTGATTCTAGAGATCAGAACAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAACGTCGATCATTACAACGATGTTTCCCAAAGTGAAAGGAGTAATATATTTTAGTAAGAAATAAAGTCGCATACTTTATTGAAAGCTAAAAGAATTATAATCTTTTGCACGATTTTTGAAAAATAGAAATCTAATTCT]

[+] EMBL BI506117             [AAAGTGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCATGGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGGCAATTAGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATGAAATAACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCNNNAATAGGTGTGTGTGTGTGTGTATACAGAGTGATTCTAGAGATCAGAACAACGAAAATTAATCGAAAATTTCTTAACCGTGGCAACGTCGATCATTACAACGATGTTTCCCAAAGTGAAAGGAGTAATATATTTTAGTAAGAAATAAAGTCGCATACTTTATTGAAAGCTAAAAGAATTATAATCTTTTGCACGATTTTTGAAAAATAGAAATCTAATTCT]




>consensus_276#1
AAAGTGTTCGTGCGAGGTAGCCGCTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAG
AAACGAATCATGGCTTGAAAATTATCCACCCGAGCGAAGTAGACACATCGTCGGGCAATT
AGATCACGACCGATCGCACAACCCGGGAGAACTCGACAATTGCGTCTAATTATACGTTGC
CCGCAAGAAGGTGGCTCCGGGAGGCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGG
GAACGCGAGCGATTTTTCTCCCGCATCGACTAATAAATCGGCGATAACGAGAATGAAATA
ACAGCCTGGGGGCATAAAGGTGTTGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCN
NNAATAGGTGTGTGTGTGTGTGTATACAGAGTGATTCTAGAGATCAGAACAACGAAAATT
AATCGAAAATTTCTTAACCGTGGCAACGTCGATCATTACAACGATGTTTCCCAAAGTGAA
AGGAGTAATATATTTTAGTAAGAAATAAAGTCGCATACTTTATTGAAAGCTAAAAGAATT
ATAATCTTTTGCACGATTTTTGAAAAATAGAAATCTAATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_276#0      GGAATAGGCAAATAAAGGGGGAATGAAAGAGAGCAAAAAAGTGTTCGTGCGAGGTAGCCG 60
consensus_276#1      -------------------------------------AAAGTGTTCGTGCGAGGTAGCCG 23
                                                          ***********************

consensus_276#0      CTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCATGGCTTGAAAATT 120
consensus_276#1      CTCACTTTCATCGATTGCGCTCCCGACACGGTTGCAGAAACGAATCATGGCTTGAAAATT 83
                     ************************************************************

consensus_276#0      ATCCACCCGAGCGAAGTAGACACATCGTCGGACAATTAGATCACGACCGATCGCACAACC 180
consensus_276#1      ATCCACCCGAGCGAAGTAGACACATCGTCGGGCAATTAGATCACGACCGATCGCACAACC 143
                     ******************************* ****************************

consensus_276#0      CGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAG 240
consensus_276#1      CGGGAGAACTCGACAATTGCGTCTAATTATACGTTGCCCGCAAGAAGGTGGCTCCGGGAG 203
                     ************************************************************

consensus_276#0      GCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCG 300
consensus_276#1      GCGCCTCGAGAGAGAGTTTCTAGCAGTGGCGAAGCGGGAACGCGAGCGATTTTTCTCCCG 263
                     ************************************************************

consensus_276#0      CATCGACTAATAAATCGGCGATAACGAGAATAAAATAACAGCCTGGGGGCATAAAGGTGT 360
consensus_276#1      CATCGACTAATAAATCGGCGATAACGAGAATGAAATAACAGCCTGGGGGCATAAAGGTGT 323
                     ******************************* ****************************

consensus_276#0      TGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCAGCAATAGATGTGTGTGTGT---- 416
consensus_276#1      TGACCGATTTTTTCCGCCTCGACGAATAGAATTGTCNNNAATAGGTGTGTGTGTGTGTGT 383
                     ************************************   ***** ***********    

consensus_276#0      ATACAGGGTGATTCTAGAGATCAGAATAACGAAAATTAATCGAAAATTTCTTAACCGTGG 476
consensus_276#1      ATACAGAGTGATTCTAGAGATCAGAACAACGAAAATTAATCGAAAATTTCTTAACCGTGG 443
                     ****** ******************* *********************************

consensus_276#0      CAACTGTCAATCATTACAACGATGATTTTCAAAGTGAAAGGAGTAATATATTTTAGAGAA 536
consensus_276#1      CAAC-GTCGATCATTACAACGATGTTTCCCAAAGTGAAAGGAGTAATATATTTTAG---- 498
                     **** *** *************** **  ***************************    

consensus_276#0      TAGTTGTAAGAAATATTTAAAGTCGCATACTTTATTGAAAACTGAAAGAATTATAATATC 596
consensus_276#1      ------TAAGAAATA----AAGTCGCATACTTTATTGAAAGCTAAAAGAATTATAATCT- 547
                           *********    ********************* ** ************* * 

consensus_276#0      TTTGCACGA-------AAAATGGAAATCTAATTCTAGATTTGAAAGGAAAGATAAAGAAT 649
consensus_276#1      TTTGCACGATTTTTGAAAAATAGAAATCTAATTCT------------------------- 582
                     *********       ***** *************                         

consensus_276#0      GGTTTT 655
consensus_276#1      ------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)