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Apis mellifera
cluster # 2764 cluster # 2764       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2764#0 length = 583 sequences # 1  
consensus_2764#1 length = 443 sequences # 1  

consensusID : consensus_2764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGCGGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGGGTTGGCCTCGGCAGCCCCCTCGGCCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCAAGAGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGGAGAATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACATGAAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG]

[+] EMBL BI509277             [ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGCGGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGGGTTGGCCTCGGCAGCCCCCTCGGCCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCAAGAGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGGAGAATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACATGAAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG]


>consensus_2764#0 ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGA CGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCC GGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGC GGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGG GTTGGCCTCGGCAGCCCCCTCGGCCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCAAG AGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGGAG AATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCTTA ACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACATG AAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAGAA GGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG



consensusID : consensus_2764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence
                              [AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGAAAGACTCTAGTGGACGGCTATGACAGTGCAGTGACTCGCTGATTTGTTATTTGTTTTTTCTGTTTCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACATGAAGGAATATCCAGATTATAAATACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGNANATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATGC]

[+] EMBL BI509543             [AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGAAAGACTCTAGTGGACGGCTATGACAGTGCAGTGACTCGCTGATTTGTTATTTGTTTTTTCTGTTTCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCTTTGTGGAGGAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCCGGCCACTTTATGAGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACATGAAGGAATATCCAGATTATAAATACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGNANATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATGC]


>consensus_2764#1 AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGAAAGA CTCTAGTGGACGGCTATGACAGTGCAGTGACTCGCTGATTTGTTATTTGTTTTTTCTGTT TCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCTTTGTGGAG GAAGACGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGG CCGCCGGCCACTTTATGAGGCGCCGAATGGAAACTCTTAACGGAGGATGAGAAACGACCC TTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACATGAAGGAATATCCAGATTATAAA TACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAGAAGNANATCCTTACAGTATTCCC TACCCTAGCGTGCCTATGGATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2764#0      ACTATCACCAAATCCGATCTTCTCTTAGGTTCTTCTTTAATTATTCTTTGTGGAGGAAGA 60
consensus_2764#1      ------------------------------------------------------------
                                                                                  

consensus_2764#0      CGAGACGAGAGTCTCAACCACGGCACCAAAATTGAGCTGGACTTGCACCAACGGGCCGCC 120
consensus_2764#1      ------------------------------------------------------------
                                                                                  

consensus_2764#0      GGCCACTTTATGAGAGCCGGCGGCAACATGTGCGACGGCTCGTTCACCGAGACCCTGCGC 180
consensus_2764#1      ----AGGAGAGAAGTGTATTTGGGGTGGAGTACAGTGAACAACTAAGAAAGAAAGAAAGA 56
                          *    *  ** *     **      ** *   *      * *   ***      * 

consensus_2764#0      GGTATGCAGGGTATGCCGGGTACGTCACCACCCGGTGGCGCGGGGGTCGGCCCCATGGGG 240
consensus_2764#1      AAGACTCTAGTG--GACGGCTATG--ACAGTGCAGTGACTCGCTGATTTGTTATTTGTTT 112
                         *  *  *    * *** ** *  **    * *** * **  * *  *     **   

consensus_2764#0      GTTG-GCCTCGGCAGCCCCCTCGG-CCCGAGCCCGAAGAAGGCGCAGGTGGAGCACATCA 298
consensus_2764#1      TTTCTGTTTCGACACTATCACCAAATCCGATCTTCTCTTAGNTTCTTCTTTAATTATTCT 172
                       **  *  *** **    *  *    **** *       **   *   *  *     ** 

consensus_2764#0      AGAGGCCGATGAACGCGTTCATGGTCTGGTCCCGGCTCCAGCGGCGGAAGATCGCCCAGG 358
consensus_2764#1      TTGTGGAGGAAGACGAGACGAGAGTCT-----CAACCACGGCACC--AAAATTGAGCTGG 225
                          *  *    *** *   *  ****     *  *  * **  *  ** ** *  * **

consensus_2764#0      AGAATCCCAAGATGCATAATTCAGAGATATCCAAGAGACTCGGCGCCGAATGGAAACTCT 418
consensus_2764#1      A-----CTTGCACCAACGGGCCGCCGG---CCACTTTATGAGGCGCCGAATGGAAACTCT 277
                      *     *    *   *     *   *    ***    *   *******************

consensus_2764#0      TAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCCCAACACA 478
consensus_2764#1      TAACGGAGGATGAGAAACGACCCTTCATCGATCAGGCAAAAAGGTTACGGGCTCAACACA 337
                      **************************************************** *******

consensus_2764#0      TGAAGGAATATCCAGATTATAAATACAGGCCTAGAAGAAAACCGAAAACTTTACGGAAAG 538
consensus_2764#1      TGAAGGAATATCCAGATTATAAATACAGNCCTAGAAGAAAACCGAAAACTTTACGGAAAG 397
                      **************************** *******************************

consensus_2764#0      AAGGATATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATG- 583
consensus_2764#1      AAGNANATCCTTACAGTATTCCCTACCCTAGCGTGCCTATGGATGC 443
                      *** * *************************************** 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)