These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [TTTTTTTCGATAAAGAGAGTGCTTTTAAGAAGAATTATCACATGTGAGAAAAAGATGAGGAAGAGGCGAGTGTCTCCATCAATTCGAGCCATCAATTTTTTTTTTTCCTCTTCCTTTCAAAGCCAAAACGAGCTAATACGATCCTTCGCTCTTTTAAGCCGATCTTTTACGCGTTCTATACTTTTTTATTTTTTATTTTTTCCACGAAACGTCATCTAACGCAATATCAACTTTGCTTTCGAAAGTATCGATTTTTCGAAACACTTTCTCTTTCCTTTCCTTTCTTCTCTCTCTTCCGACCAATGGTTCTCTTTCTTTTTTTTCCCCCGAGCGGAGACAAGAAAGACACCATTTTCCAACCACGTTCAACAACGTTGCTTGCTCTCCCCGGCTCTCTCTCCCCCGAATTTAATTAATCGATCATTGAATAAAGGCGGCGGCCGTCACGTGAAAAAAGGGAACACGTGTCTC] [+] EMBL BI946517 [TTTTTTTCGATAAAGAGAGTGCTTTTAAGAAGAATTATCACATGTGAGAAAAAGATGAGGAAGAGGCGAGTGTCTCCATCAATTCGAGCCATCAATTTTTTTTTTTCCTCTTCCTTTCAAAGCCAAAACGAGCTAATACGATCCTTCGCTCTTTTAAGCCGATCTTTTACGCGTTCTATACTTTTTTATTTTTTATTTTTTCCACGAAACGTCATCTAACGCAATATCAACTTTGCTTTCGAAAGTATCGATTTTTCGAAACACTTTCTCTTTCCTTTCCTTTCTTCTCTCTCTTCCGACCAATGGTTCTCTTTCTTTTTTTTCCCCCGAGCGGAGACAAGAAAGACACCATTTTCCAACCACGTTCAACAACGTTGCTTGCTCTCCCCGGCTCTCTCTCCCCCGAATTTAATTAATCGATCATTGAATAAAGGCGGCGGCCGTCACGTGAAAAAAGGGAACACGTGTCTC] consensusID : consensus_2797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [TTACGCGTTCTATACTTTTTTATTTTTTTTTTCCACAAAACGTTATTTAACGCGACATCAACTTTGCTTTCGAAAGTATCGATTTTTCGAAACACTTTCTCTTTCCTTTCCTTTCTTTTCCTTTCTTCTCTCTCTTCCGACCAATGTTTCTCTTTCTTTTTTTTCCCCCGAGCGGAGACAAGAAAGACACCATTTTCCAACCACGTTCAACAACGTTGCTTGCTCTCCCCGGCTCTCTCCTCCCCCGAATTTAATTAATCGATTATTGAAATAAAGTCGTCGTCGTCACGTGAAAAAAAGAGAAACACGTGTCTCGTATTT] [+] EMBL BI511286 [TTACGCGTTCTATACTTTTTTATTTTTTTTTTCCACAAAACGTTATTTAACGCGACATCAACTTTGCTTTCGAAAGTATCGATTTTTCGAAACACTTTCTCTTTCCTTTCCTTTCTTTTCCTTTCTTCTCTCTCTTCCGACCAATGTTTCTCTTTCTTTTTTTTCCCCCGAGCGGAGACAAGAAAGACACCATTTTCCAACCACGTTCAACAACGTTGCTTGCTCTCCCCGGCTCTCTCCTCCCCCGAATTTAATTAATCGATTATTGAAATAAAGTCGTCGTCGTCACGTGAAAAAAAGAGAAACACGTGTCTCGTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2797#0 TTTTTTTCGATAAAGAGAGTGCTTTTAAGAAGAATTATCACATGTGAGAAAAAGATGAGG 60 consensus_2797#1 ------------------------------------------------------------ consensus_2797#0 AAGAGGCGAGTGTCTCCATCAATTCGAGCCATCAATTTTTTTTTTTCCTCTTCCTTTCAA 120 consensus_2797#1 ------------------------------------------------------------ consensus_2797#0 AGCCAAAACGAGCTAATACGATCCTTCGCTCTTTTAAGCCGATCTTTTACGCGTTCTATA 180 consensus_2797#1 ----------------------------------------------TTACGCGTTCTATA 14 ************** consensus_2797#0 CTTTTTTATTTTTTATTTTTTCCACGAAACGTCATCTAACGCAATATCAACTTTGCTTTC 240 consensus_2797#1 CTTTTTTATTTTTT---TTTTCCACAAAACGTTATTTAACGCGACATCAACTTTGCTTTC 71 ************** ******** ****** ** ****** * *************** consensus_2797#0 GAAAGTATCGATTTTTCGAAACACTTTCTCTTTCCTTTCCTTTCTT----------CTCT 290 consensus_2797#1 GAAAGTATCGATTTTTCGAAACACTTTCTCTTTCCTTTCCTTTCTTTTCCTTTCTTCTCT 131 ********************************************** **** consensus_2797#0 CTCTTCCGACCAATGGTTCTCTTTCTTTTTTTTCCCCCGAGCGGAGACAAGAAAGACACC 350 consensus_2797#1 CTCTTCCGACCAATGTTTCTCTTTCTTTTTTTTCCCCCGAGCGGAGACAAGAAAGACACC 191 *************** ******************************************** consensus_2797#0 ATTTTCCAACCACGTTCAACAACGTTGCTTGCTCTCCCCGGCTCTCTC-TCCCCCGAATT 409 consensus_2797#1 ATTTTCCAACCACGTTCAACAACGTTGCTTGCTCTCCCCGGCTCTCTCCTCCCCCGAATT 251 ************************************************ *********** consensus_2797#0 TAATTAATCGATCATTGAATAAAGGCGGCGGCCGTCACGTGAAAAAAGGG--AACACGTG 467 consensus_2797#1 TAATTAATCGATTATTGAAATAAAGTCGTCGTCGTCACGTGAAAAAAAGAGAAACACGTG 311 ************ ****** ** * * * *************** * ******** consensus_2797#0 TCTC------ 471 consensus_2797#1 TCTCGTATTT 321 **** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |