These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTTTTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAGTGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTTCTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTTGTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTGTTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGAAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTAGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACGACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGATAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGAAATACTTGTAAAGTATTTTTTCCATCTT] [+] EMBL BI504529 [TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTTTTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAGTGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTTCTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTTGTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTGTTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGAAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTAGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACGACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGATAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGAAATACTTGTAAAGTATTTTTTCCATCTT] consensusID : consensus_2835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATCCAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCATTTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAGACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAGTTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCATTGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAAACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT] [+] EMBL BE844607 [TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATCCAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCATTTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAGACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAGTTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCATTGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAAACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2835#0 TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTT 60 consensus_2835#1 ------------------------------------------------------------ consensus_2835#0 TTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAG 120 consensus_2835#1 --------TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAA- 51 **** * ** * * ** * *** * * * * * *** consensus_2835#0 TGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTT 180 consensus_2835#1 -----CACCTTATCCAAATAT---TTCATTTCTTTGATATCT----GTATAAGTCAATAT 99 * * * **** ** * *** * ***** * * ** ** * consensus_2835#0 CTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTT 240 consensus_2835#1 TCCCTTATTTTTCTCGTGCAT-TTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTT 158 * *** * ** * ** ** * *** * * * ** ** * * ** consensus_2835#0 GTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTG 300 consensus_2835#1 GATTTTGAGCTAATTCATAAAGACC---AAATGCTATCGTTGATGAAGAAGTTTCAAATC 215 * * * ****** * * ** * * **** * * * * * consensus_2835#0 TTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATA-TTCACATCCGG 359 consensus_2835#1 CGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGT 275 * * **** * * * ** * * * * * * ** **** * consensus_2835#0 AAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTT 419 consensus_2835#1 CCATTTTTTCTGGATGTTCTTTC----AGTTGCATGAGC---ATATTGATAAAA----TC 324 * * ******** * *** * * * ** * *** * * ** * consensus_2835#0 AGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTAC 479 consensus_2835#1 TGATCGAACTATATCGTTATCCT---TTCTATATTTCATTGTGTCACTGACTAAATTTAT 381 *** * *** * * * * * * * ** * * * ******* consensus_2835#0 GACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGA 539 consensus_2835#1 AAAAAAT-TCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATG 440 * * * ** * * ** * * ** *** * * * * consensus_2835#0 TAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGG 599 consensus_2835#1 GAAAAAATACTTTA-------CAAGTATTTCCGATCATCAATTTCAAACTAGGTGA--AA 491 * *** ** **** * * *** * * ** ** * * *** consensus_2835#0 AAATACTTGTAAAGTATTTTTTCCATCTT 628 consensus_2835#1 AAATCTTCTTGCCCCATTCTACGAAAT-- 518 **** * * *** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |