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Apis mellifera
cluster # 2835 cluster # 2835       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2835#0 length = 628 sequences # 1  
consensus_2835#1 length = 518 sequences # 1  

consensusID : consensus_2835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTTTTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAGTGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTTCTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTTGTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTGTTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGAAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTAGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACGACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGATAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGAAATACTTGTAAAGTATTTTTTCCATCTT]

[+] EMBL BI504529             [TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTTTTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAGTGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTTCTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTTGTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTGTTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGAAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTAGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACGACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGATAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGAAATACTTGTAAAGTATTTTTTCCATCTT]


>consensus_2835#0 TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTT TTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAG TGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTT CTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTT GTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTG TTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGA AAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTA GATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACG ACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGAT AGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGA AATACTTGTAAAGTATTTTTTCCATCTT



consensusID : consensus_2835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATCCAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCATTTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAGACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAGTTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCATTGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAAACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT]

[+] EMBL BE844607             [TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATCCAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCATTTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAGACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAGTTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCATTGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAAACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT]


>consensus_2835#1 TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATC CAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCAT TTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAG ACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTG CGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAG TTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCAT TGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACC GATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAA ACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2835#0      TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTT 60
consensus_2835#1      ------------------------------------------------------------
                                                                                  

consensus_2835#0      TTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAG 120
consensus_2835#1      --------TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAA- 51
                              ****  * **    * *  ** *   ***   *   * *   *  *  *** 

consensus_2835#0      TGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTT 180
consensus_2835#1      -----CACCTTATCCAAATAT---TTCATTTCTTTGATATCT----GTATAAGTCAATAT 99
                           *  *   * **** **   *   *** *  *****      * * ** **    *

consensus_2835#0      CTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTT 240
consensus_2835#1      TCCCTTATTTTTCTCGTGCAT-TTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTT 158
                          * ***       *  ** *  ** **  * *** * * *   ** **  * *  **

consensus_2835#0      GTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTG 300
consensus_2835#1      GATTTTGAGCTAATTCATAAAGACC---AAATGCTATCGTTGATGAAGAAGTTTCAAATC 215
                      *    *     * ******     *   * **   * * **** * *  *  *     * 

consensus_2835#0      TTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATA-TTCACATCCGG 359
consensus_2835#1      CGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGT 275
                        * *      **** * *  *    **   * * *   *  * * ** ****     * 

consensus_2835#0      AAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTT 419
consensus_2835#1      CCATTTTTTCTGGATGTTCTTTC----AGTTGCATGAGC---ATATTGATAAAA----TC 324
                        *  *      ********  *    *** * * * **   * *** * * **    * 

consensus_2835#0      AGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTAC 479
consensus_2835#1      TGATCGAACTATATCGTTATCCT---TTCTATATTTCATTGTGTCACTGACTAAATTTAT 381
                       ***  *   ***  *     *    *  *  * * *  **  * *    * ******* 

consensus_2835#0      GACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGA 539
consensus_2835#1      AAAAAAT-TCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATG 440
                       *   *  * ** *     *    ** *      *  **  *** * *  *  *      

consensus_2835#0      TAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGG 599
consensus_2835#1      GAAAAAATACTTTA-------CAAGTATTTCCGATCATCAATTTCAAACTAGGTGA--AA 491
                       *   ***    **       **** *  *    *** * * **  ** * * ***    

consensus_2835#0      AAATACTTGTAAAGTATTTTTTCCATCTT 628
consensus_2835#1      AAATCTTCTTGCCCCATTCTACGAAAT-- 518
                      ****  *  *     *** *    *    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)