These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 717 fasta sequence [TAAGAGAGATTTGTAGAGAGTTTATATTAGGCCAATTGTCACAGTGAGAGTTATAATACGATAGTGATG-TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCGAA-AATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATATAGATTAACGAAATTGTATTACTTAACGTTAAGAGGAAACATAATTTGTTCGTAGATGATTTTCTTTTATTTATAATCGAAAGTTGCATCGAGAAGCAAGTTTCGCGTTGAAAAAAATCAAAATTTATAAACTTATTTAATTGTAGGAATTGATGGATTAAAATGATAATATATTAGC] [+] EMBL BI504811 [TAAGAGAGATTTGTAGAGAGTTTATATTAGGCCAATTGTCACAGTGAGAGTTATAATACGATAGTGATG TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCGAATAATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATATAGATTAACGAAATT ] [+] EMBL BI508210 [ ATATTAGGCCAATTGTCACAGTGAGAGTTATAATACGATAGTGATGTTTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCG AATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGNNGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATA ] [+] EMBL BI508618 [ CACAGTGAGAGTTATAATACGATAGTGATG TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCG AATCGACGAGAAATATTGAATGNNGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTT ] [+] EMBL BI509318 [ GAGTTATAATACGATAGTGATG TTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCCTTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAGCTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCGAATAATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGTGCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATATAGATTAACGAAATTGTATTACTTAACGTTAAGAGGAAACATAATTTGTTCGTAGATGATTTTCTTTTATTTATAATCGAAAGTTGCATCGAGAAGCAAGTTTCGCGTTGAAAAAAATCAAAATTTATAAACTTATTTAATTGTAGGAATTGATGGATTAAAATGATAATATATTAGC] consensusID : consensus_286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [GCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGATATTCAATATTGGCGGGAATTGGCTAATGAAGAATTGGAGGAAGCTTTATCGTACAAATGGAATACGAACAAAGCGAAGAACGTGATCGTCTTTGTAGGCGATGGCATGAGTCCTGACACCATAACCGCCAGTAGAATATACCGTGCTGGCGAGAGCAGTCGTTTGGCTTGGGAAAATTTTCCTCACATAGGCATTCTTAAGACGTACAATACTAACAAGCAAGTACCAGATTCAGCTTCAACGGCAACTGCTTTGTTTGGTGGAGTGAAAACAAATTTCGATTTGGTT] [+] EMBL BI517233 [GCCACAATTACAGGCACGAAAGATCGTGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATACGTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTATTCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGATATTCAATATTGGCGGGAATTGGCTAATGAAGAATTGGAGGAAGCTTTATCGTACAAATGGAATACGAACAAAGCGAAGAACGTGATCGTCTTTGTAGGCGATGGCATGAGTCCTGACACCATAACCGCCAGTAGAATATACCGTGCTGGCGAGAGCAGTCGTTTGGCTTGGGAAAATTTTCCTCACATAGGCATTCTTAAGACGTACAATACTAACAAGCAAGTACCAGATTCAGCTTCAACGGCAACTGCTTTGTTTGGTGGAGTGAAAACAAATTTCGATTTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_286#0 TAAGAGAGATTTGTAGAGAGTTTATATTAGGCCAATTGTCACAGTGAGAGTTATAATACG 60 consensus_286#1 ------------------------------------------------------------ consensus_286#0 ATAGTGATGTTTTTTTTTTTTCTCCTTCAAAAGAAATCGTGGCCAACTATTCCAATTCCC 120 consensus_286#1 ------------------------------------------------------------ consensus_286#0 TTCCCTTCAAAGAAGAGAATTTCGTTCCGCTTCGCGTCTGATCCACCATGTTTTAATTAG 180 consensus_286#1 ------------------------------------------------------------ consensus_286#0 CTCGTCTTTTATTCTCCCAGTTTCATCATCGCCAAGCTTGCGGAATCAATCGAATGTTCG 240 consensus_286#1 ------------------------------------------------------------ consensus_286#0 AAAATCGACGAGAAATATTGAATGGTGAAATAGCACATCCGGGTGAACGAAGCTAAAAGT 300 consensus_286#1 ------------------------------------------------------------ consensus_286#0 GCTAAAAATTGACCTCGAACAGTTCAAATAGTTGGCCACAATTACAGGCACGAAAGATCG 360 consensus_286#1 ----------------------------------GCCACAATTACAGGCACGAAAGATCG 26 ************************** consensus_286#0 TGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATAC 420 consensus_286#1 TGTCGCGTTCCAGCATAATACTCGCGTAACAATTGCCTGGATGATCAATTTGTGTGATAC 86 ************************************************************ consensus_286#0 GTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTAT 480 consensus_286#1 GTGGACGGTGAAAGGATCCATCGAAGGATATAATATCTCGAGTGCCGATTCCGAACGTAT 146 ************************************************************ consensus_286#0 TCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGGTACCTGTTCTTGGCCAAATAT 540 consensus_286#1 TCTCTCGTAATTTTCAATGATTTTTATTTCGTTCCAAGATATTCAATATTGGCGGGA-AT 205 ************************************** ** * ***** * ** consensus_286#0 AGATTAACGAA--ATTGTATTA---CTTAACGTTAAGAGGAAACATAATTTGTTCGTAGA 595 consensus_286#1 TGGCTAATGAAGAATTGGAGGAAGCTTTATCGTACAAATGGAATACGAACAAAGCGAAGA 265 * *** *** **** * * *** *** * * * ** * * ** *** consensus_286#0 ---TGATTTTCTTT-TATTTATAATCGAAAGTT---GCATCG--------AGAAGCAAGT 640 consensus_286#1 ACGTGATCGTCTTTGTAGGCGATGGCATGAGTCCTGACACCATAACCGCCAGTAGAATAT 325 **** ***** ** * *** ** * ** ** * * consensus_286#0 TTCGCGTTGAAAAAAATCAAAATTTAT------AAACTTATTTAATTGTAGGAATTGATG 694 consensus_286#1 ACCGTGCTGGCGAGAGCAGTCGTTTGGCTTGGGAAAATTTTCCTCACATAGGCATTCTTA 385 ** * ** * * *** *** ** * **** *** * consensus_286#0 GAT--TAAAATGATAATATATTAGC----------------------------------- 717 consensus_286#1 AGACGTACAATACTAACAAGCAAGTACCAGATTCAGCTTCAACGGCAACTGCTTTGTTTG 445 ** *** *** * ** consensus_286#0 ----------------------------- consensus_286#1 GTGGAGTGAAAACAAATTTCGATTTGGTT 474 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |