These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [TTTTACTCTCTTTTTATGTTTTACAAATTTAATTGTTGCATGCACTTATTAAATAACAAACAATGACAATGATCTTTTTATAGATTATTATTATATATTAATACAGAGAACAGTTTAATAGTCAATTAATTTGTGATATTTTGAAAATTATATCTATATGTACACGTGTATCGTAAACCATAAAACAATCGTTTCTTATCTGAACAATAGTAAATTTCAACTTTTTTCAAAAAGGAATTTATTCTTGAAACATTATTGATTTTATTTCAATGCTGAAATGATGAAATCGAGGAAGGCGGTGACCCTAGTATAGACTCCAGGAAATCCGGGTTCAGCACATTTATAACCATAGGATACAACTCCTATTTGATAATAATACCAATGTTGCGGTAACATTAAAGGGCCTCCGCTATCACCCTGACAAGCATCTTTTCCACCTTGTCTGTATGCAGCGCATAATACACGATTATCGATCTCAGCGGCTTTAAATTTGGAATAAGCTTGTTTGCATTGTTCATTGTTGATTACTGGTAACTGTATCTCTAATAATATATCGCTAGCTGGTCCTCGGGTTTCAGTTGATCCCCATCCAGCAACGAAGGGATAGTTTCGAACGAAG] [+] EMBL BE844488 [TTTTACTCTCTTTTTATGTTTTACAAATTTAATTGTTGCATGCACTTATTAAATAACAAACAATGACAATGATCTTTTTATAGATTATTATTATATATTAATACAGAGAACAGTTTAATAGTCAATTAATTTGTGATATTTTGAAAATTATATCTATATGTACACGTGTATCGTAAACCATAAAACAATCGTTTCTTATCTGAACAATAGTAAATTTCAACTTTTTTCAAAAAGGAATTTATTCTTGAAACATTATTGATTTTATTTCAATGCTGAAATGATGAAATCGAGGAAGGCGGTGACCCTAGTATAGACTCCAGGAAATCCGGGTTCAGCACATTTATAACCATAGGATACAACTCCTATTTGATAATAATACCAATGTTGCGGTAACATTAAAGGGCCTCCGCTATCACCCTGACAAGCATCTTTTCCACCTTGTCTGTATGCAGCGCATAATACACGATTATCGATCTCAGCGGCTTTAAATTTGGAATAAGCTTGTTTGCATTGTTCATTGTTGATTACTGGTAACTGTATCTCTAATAATATATCGCTAGCTGGTCCTCGGGTTTCAGTTGATCCCCATCCAGCAACGAAGGGATAGTTTCGAACGAAG] consensusID : consensus_2868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [TAAAAACTACCTTAAGCAATCTCTGTGCAGGTATGAAAATAACGATCCATTCGTTTGCTGCCCAAAGAATTCAGGCAGAGAGAGCAAAATAGAAAGAGAAAATTCGTATGGACCCTTGTTACCACCACAATGTGGTTTCAATAATATCAGTCACACAAGAGTAGTTGGTGGTATTCCAGCTAAACTTGGTGCTTGGCCCTGGCTTACTGTATTAGGTTTTCGTAGTTCTTTGAACCCTTCGCAACCAAGATGGCTATGTGGAGGTTCCTTGATATCGGCTAGACACGTTCTAACTGCGGCGCATTGCGCAGTTCGTAAGGATTTATATGTAGTTCGTATCGGAGATTTAGATTTATCACGAGATGATGATGATGCTCATCCTATTCAAGTAGAAATCGAAGATAAATTGATACATCCTGATTATAGTACTACGACATTTGTAAACGATATTGCCGTTCTCAGATTGGCACAAGATGTACAATTTACAGAATATGTATATCCCATTTGTCTTCCTGTAGAAGATAATCTTCGAAACAATAACTTCGTTCGAAACTATCCCTTCGTTGCTGGATGG] [+] EMBL BI507178 [TAAAAACTACCTTAAGCAATCTCTGTGCAGGTATGAAAATAACGATCCATTCGTTTGCTGCCCAAAGAATTCAGGCAGAGAGAGCAAAATAGAAAGAGAAAATTCGTATGGACCCTTGTTACCACCACAATGTGGTTTCAATAATATCAGTCACACAAGAGTAGTTGGTGGTATTCCAGCTAAACTTGGTGCTTGGCCCTGGCTTACTGTATTAGGTTTTCGTAGTTCTTTGAACCCTTCGCAACCAAGATGGCTATGTGGAGGTTCCTTGATATCGGCTAGACACGTTCTAACTGCGGCGCATTGCGCAGTTCGTAAGGATTTATATGTAGTTCGTATCGGAGATTTAGATTTATCACGAGATGATGATGATGCTCATCCTATTCAAGTAGAAATCGAAGATAAATTGATACATCCTGATTATAGTACTACGACATTTGTAAACGATATTGCCGTTCTCAGATTGGCACAAGATGTACAATTTACAGAATATGTATATCCCATTTGTCTTCCTGTAGAAGATAATCTTCGAAACAATAACTTCGTTCGAAACTATCCCTTCGTTGCTGGATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2868#0 TTTTACTCTCTTTTTATGTTTTACAAATTTAATTGTTGCATGCACTTATTAAATAACAAA 60 consensus_2868#1 -----------------------TAAA---AACTACCTTAAGCAATCTCTGTGCAG-GTA 33 *** ** * * *** * * * * consensus_2868#0 CAATGACAATGATCTTTTTATAGATTATTATTATATATTAA-TACAGAGAACAGTTTAAT 119 consensus_2868#1 TGAAAATAACGATCCATTCGTTTGCTGCCCAAAGAATTCAGGCAGAGAGAGCAAAATAG- 92 * * ** **** ** * * * * * * * ***** ** ** consensus_2868#0 AGTCAATTAATTTGTG-ATATTTTGAAAATTATATCTATATGTACACGTGTATCGTAAAC 178 consensus_2868#1 AAAGAGAAAATTCGTATGGACCCTTGTTACCACCACAATGTGGTTTCA-ATAATATCAGT 151 * * **** ** * * * * * ** ** * ** * * consensus_2868#0 CATAAAACAATCGTTTCT--TATCTGAACAATAGTAAATTTCAACTTTTTTCAAAAAGGA 236 consensus_2868#1 CACACAAGAGTAGTTGGTGGTATTCCAGCTAAACTTGGTGCTTGGCCCTGGCTTACTGTA 211 ** * ** * * *** * *** * * * * * * * * * * * consensus_2868#0 ATTTATTCTTGAAACATTATTGATTTTATTTCAATGCTGAAATGATGAAATCGAGGAAGG 296 consensus_2868#1 TTAGGTTTTCGTAGT-TCTTTGAACCCTTCGCAA--CCAAGATGGCTATGTGGAGGTTCC 268 * ** * * * * **** * *** * * *** * * **** consensus_2868#0 CGGTGACC--CTAGTATAGACTCCAGGAAATCCGGGTTCAGCACATTTATAACCATAGG- 353 consensus_2868#1 TTGATATCGGCTAG-ACACGTTCTAACTGCGGCGCATTGCGCA-GTTCGTAAGGATTTAT 326 * * * **** * * ** * ** ** *** ** *** ** consensus_2868#0 ATACAACTCCTATTTGATAATAATACCAATGTTGCGGTAACATTAAAGGGCCTCCGCTAT 413 consensus_2868#1 ATGTAGTTCGTATCGGAGATTTAGATTTATCACGAGATGATGATGATGCTCATCCTATTC 386 ** * ** *** ** * * * * ** * * * * * * * * *** * consensus_2868#0 CACCCTGA--CAAGCATCTTTTCCACCTTGTCTGTATGCAGCGC-ATAATACACGATTAT 470 consensus_2868#1 AAGTAGAAATCGAAGATAAATTG-ATACATCCTGATTATAGTACTACGACATTTG-TAAA 444 * * * * ** ** * *** * ** * * * * * * * consensus_2868#0 CGATCTCAGCGGCTTTAAATTTGGAATAAGCTTGTTTGCATTGTTCATTGTTGATTACTG 530 consensus_2868#1 CGATATT-GCCGTTCTCAGATTGGCACAAGAT-GTACAATTTACAGAATATGTATATCCC 502 **** * ** * * * * **** * *** * ** ** * * * ** * consensus_2868#0 GTAACTGTATCTCTAATA-ATATATCGCTAGCTGGTCCTCGGGTTTCAGTTGATCCCCAT 589 consensus_2868#1 ATTTGTCTTCCTGTAGAAGATAATCTTCGAAACAATAACTTCGTTCGAAACTATCCC--T 560 * * * ** ** * *** * * * *** * ***** * consensus_2868#0 CCAGCAACGAAGGGATAGTTTCGAACGAAG 619 consensus_2868#1 TCGTTGCTGGATGG---------------- 574 * * * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |