These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGCTCGATCGATATTACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTCGTTCTTTGTAACAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCCAGCAAGAAACGATCGATCGCGTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAAAGTTCGTGCAGTTTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATATTCGCAATTACTTTTTATTATTGCTTCCACATCCGTGACACCGGTGGATATATCAAAAGATGACAGTTGCGAGCGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAGGATCCTTTGCCCGGGGAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAAGTTGAAGTAAAAACCTACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCCACATATCTC] [+] EMBL BI513220 [ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGCTCGATCGATATTACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTCGTTCTTTGTAACAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCCAGCAAGAAACGATCGATCGCGTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAAAGTTCGTGCAGTTTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATATTCGCAATTACTTTTTATTATTGCTTCCACATCCGTGACACCGGTGGATATATCAAAAGATGACAGTTGCGAGCGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAGGATCCTTTGCCCGGGGAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAAGTTGAAGTAAAAACCTACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCCACATATCTC] consensusID : consensus_2879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTTTTGCTCGTTACAACTTTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATCGCACCTTTTGATATATCCACCGGTGTCACGGATGTGGAAGCAATAATAAAAAGTAATTGCGAATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGAGTTTTCACGTGGAAGTGTTGGCACGATGTATAAAAAAAAAAAAGGAGTGGAAAAATTTCTAAGAATACACGCTCGATGTTGCAACATTAATACGATGTCAAAGGTAAGATTAATCGTTGGCGCGATAGAGAAAAAAAAAAAAAGTATGGAAGTGGAGGATTTTTTATTCCAATTCTACAAATTTTTCGATGGCAATACAGAAAAGCTGGTAATAATTGACGAAACCGTGGAAATCCGAGAATCCTAGTTGAATTCTAGTAATTTTTTCTCGCCAACGGGGGGAAAATTGGTATTACCGATA] [+] EMBL BE844459 [AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTTTTGCTCGTTACAACTTTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATCGCACCTTTTGATATATCCACCGGTGTCACGGATGTGGAAGCAATAATAAAAAGTAATTGCGAATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGAGTTTTCACGTGGAAGTGTTGGCACGATGTATAAAAAAAAAAAAGGAGTGGAAAAATTTCTAAGAATACACGCTCGATGTTGCAACATTAATACGATGTCAAAGGTAAGATTAATCGTTGGCGCGATAGAGAAAAAAAAAAAAAGTATGGAAGTGGAGGATTTTTTATTCCAATTCTACAAATTTTTCGATGGCAATACAGAAAAGCTGGTAATAATTGACGAAACCGTGGAAATCCGAGAATCCTAGTTGAATTCTAGTAATTTTTTCTCGCCAACGGGGGGAAAATTGGTATTACCGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2879#0 -----------ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGC 49 consensus_2879#1 AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTT 60 * ** ** * **** ** * * * * consensus_2879#0 TCGATCGATATTACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTC 109 consensus_2879#1 TTGCTCGTTACAACT--TTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATC 118 * * *** ** ** * *** ** ** *** ** * ** * * * ** consensus_2879#0 GTTCTTTGTAACAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCC 169 consensus_2879#1 GCACCTTTTGATATATCCACCGGTGTCACGGA----TGTGGAAGCAATAATAAAAAGTAA 174 * * ** * * * * *** * * * *** ** ***** * consensus_2879#0 AGCAAGAAACGATCGATCGC-GTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAA 228 consensus_2879#1 TTGCGAATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGA-GTTTTCACGTGGAA 233 * * * **** * * ** * * * * * *** ******** consensus_2879#0 A-GTTCGTGCAGTTTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATA 287 consensus_2879#1 GTGTTGGCACGATGTATAAAAAAAAAAAA---------GGAGTGGAAA--AATTTCTAAG 282 *** * * * * ** ***** ** * * *** * ****** * consensus_2879#0 TTCGCAATTACTTTTTATTATTGCTTCCACATCCGTGACACCGGTG-GATATATCAAAAG 346 consensus_2879#1 AATACA--CGCTCGATGTTGCAACATTAATA-CGATGTCAAAGGTAAGATTAATCGTTGG 339 ** ** * ** * * * * * ** ** *** *** *** * consensus_2879#0 -ATGACAGTTGCGAGCGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAG 405 consensus_2879#1 CGCGATAGAGAAAAAAAAAAAAAGTATGGAA--GTGGAGGATTTTTTATTCCAATTCTAC 397 ** ** * * * * ** * ** * * * consensus_2879#0 GATCCTTTGCCCGGGGAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAA 465 consensus_2879#1 AAATTTTTCGATGGCAATACAGAAAAGC--TGGTAA--TAATTGACGAAA--CCGTGGAA 451 * *** ** * * ** ** ****** * ** ** * ***** ** consensus_2879#0 GTTGAAGTAAAAACCTACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCC 525 consensus_2879#1 ATCCGAG---AATCCTAGTTGAATTCTAGTAAT--TTTTTCTCGCCAACGGGGGGAAAAT 506 * ** ** **** * *** ** * * **** * * * * * consensus_2879#0 ACATATCTC----- 534 consensus_2879#1 TGGTATTACCGATA 520 *** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |