These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTACCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCGTGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACCGGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGTGCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACCGAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTTGCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAAGGTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGACGGTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCACATTGGGAGGCGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTTGGTGGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA] [+] EMBL BI510451 [AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTACCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCGTGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACCGGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGTGCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACCGAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTTGCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAAGGTCGAGACA ] [+] EMBL BI505569 [ ATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGGCTCGCACATACACGTGCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACCGAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTTGCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGGACACCAAGGTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGACGGTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCACATTGGGAGGCGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTTGGTGGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA] consensusID : consensus_290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [TTAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAGGCTCCAATGCGATTCTTCATTTTCTGTATATCTGTGGTATTTGATGGGGAAATTTTTCCTCGAACGTTCGAAGAGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAAAAAAAAGGAAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGNGACACACGCATCATCCCCATCCGTCA] [+] EMBL BI515081 [TTAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAGGCTCCAATGCGATTCTTCATTTTCTGTATATCTGTGGTATTTGATGGGGAAATTTTTCCTCGAACGTTCGAAGAGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAAAAAAAAGGAAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGNGACACACGCATCATCCCCATCCGTCA] consensusID : consensus_290#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [ATGACAAACGAAGGCAAAGAGAACCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGGTACAAGACAGCAA] [+] EMBL BI511644 [ATGACAAACGAAGGCAAAGAGAACCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGGTACAAGACAGCAA] consensusID : consensus_290#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGACTATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGACGAGCCCAGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTT] [+] EMBL BI504694 [CTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGACTATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGACGAGCCCAGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_290#1 ------------------------------------------------------------ consensus_290#2 -------------------------------------ATGACAAACGAAGGCAAAGAGAA 23 consensus_290#3 ------------------------------------------------------------ consensus_290#0 AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAG 60 consensus_290#1 -----------------------------TTAAAAAAAAAAAAAAAAGAAAAATCCCTCG 31 consensus_290#2 CCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAGAAAAATCCCTCG 83 consensus_290#3 ------------------------------------------------------------ consensus_290#0 TTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTA 120 consensus_290#1 ACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCA 91 consensus_290#2 ACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCA 143 consensus_290#3 ------------------------------------------------------------ consensus_290#0 CCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCG 180 consensus_290#1 -GGACGTCGTGGTTAGCGACTCGCGTGCCGGTAG----CCTCGAGAGTCTCACCCACACC 146 consensus_290#2 -GGACGTCGTGGTTAGCGACTCGCGTGCCGGTAG----CCTCGAGAGTCTCACCCACACC 198 consensus_290#3 ---------------------------------------CTCGAGAGTCTCACCCACACC 21 consensus_290#0 TGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACC 240 ***** * * * * *** consensus_290#1 GGCAAAAG---ACTTCATCCACCTGTGCAGCCAGT-TAGACACCCATCGCGTTCAC---- 198 consensus_290#2 GGCAAAAG---ACTTCATCCACCTGTGCAGCCAGT-TAGACACCCATCGCGTTCAC---- 250 consensus_290#3 GGCAAAAG---ACTTCATCCACCTGTGCAGCCAGT-TAGACACCCATCGCGTTCAC---- 73 consensus_290#0 GGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGT 300 *** ** * *** * ** * * * ** *** *** ** consensus_290#1 -CGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAG-GCTCCAATGCGATTCTTCA 256 consensus_290#2 -CGAGTCTAAGGAGGCACTC-------GCCAGG----GAG-ACCTGGATACGAT-CATCA 296 consensus_290#3 -CGAGTCTAAGGAGGCACTC-------GCCAGG----GAG-ACCTGGATACGAT-CATCA 119 consensus_290#0 GCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACC 360 * ** * * * ** ** * * ** * * consensus_290#1 TTTTCTGTATATCTG------TGGTATTTGATGGGGAAATTTTTCCTCGAACGTTCGAAG 310 consensus_290#2 CGGTCATTATTACCA------CGAAGGACCAGGGTTTAGCGATACGGTTAGCAA-CGTCG 349 consensus_290#3 CGGTCATTATTACCA------CGAAGGACCAGGGTTTAGCGATACGGTTAGCAA-CGTCG 172 consensus_290#0 GAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTT 420 * * * * * * * * consensus_290#1 AGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAAAAA-AA-AGG 368 consensus_290#2 TCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGG-CACAGG 408 consensus_290#3 TCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGG-CACAGG 231 consensus_290#0 GCCAAGCCCTGTGCCCAACG-GCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAA 479 * ** * ** * ** * * consensus_290#1 AAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCA 428 consensus_290#2 ATGCGAGGTACAAGACAGCAA--------------------------------------- 429 consensus_290#3 ATGCGA--GACTATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGA 289 consensus_290#0 GGTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGAC 539 * * consensus_290#1 TT-ATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGN 487 consensus_290#2 ------------------------------------------------------------ consensus_290#3 CG-AGCCCAGCGAGGACGCCGAGCCCGAT-ACACCACATCGACCGTGGCCGCCATTACGG 347 consensus_290#0 GGTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCAC 599 consensus_290#1 GACACACGCATCATCCCCATCCGTCA---------------------------------- 513 consensus_290#2 ------------------------------------------------------------ consensus_290#3 GACGACCAGTTTGGAGCAACGTT------------------------------------- 370 consensus_290#0 ATTGGGAGG--CGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTT 657 consensus_290#1 ------------------------------------------ consensus_290#2 ------------------------------------------ consensus_290#3 ------------------------------------------ consensus_290#0 GGTGGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA 699 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |