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Apis mellifera
cluster # 297 cluster # 297       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_297#0 length = 1351 sequences # 4  
consensus_297#1 length = 515 sequences # 1  

consensusID : consensus_297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1351
fasta sequence
                              [GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATTTGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAGGAGGAAGAATATTGATGGCTTAATGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTCATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGTCGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACTATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTAATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCGACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAAATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGGCGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATACTAGNCACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGNTGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGTACGCTATCGAGAACAGAGAAGTAGATGCTAG]

[+] EMBL BI510196             [GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATTTGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI508851             [                                                                                                                                                                                                                       CTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATTTGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAACAGTAAGAATATTGATGGCTTAATGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTCATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI504313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGTTGCAGAATATTGATGGCTTAATGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTCATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGTCGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACTATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTAATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCGACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAAATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGGCGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATACTAGNCACGCGGACAATCGAAT                                                                                                                                 ]
[+] EMBL BI508796             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTGAAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGTCGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACTATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTAATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCGACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAAATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGGCGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATACTAGACACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGNTGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGTACGCTATCGAGAACAGAGAAGTAGATGCTAG]


>consensus_297#0 GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTT TTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCG AAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGA CTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTC GGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGG GCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATT TGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGA TCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACAT TTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGAT TTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATA TGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAGGAGGAAGAATATTGATGGCTTAA TGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTC ATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTG AAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGT CGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACT ATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTA ATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCG ACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAA ATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGG CGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATA CTAGNCACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGN TGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGT ACGCTATCGAGAACAGAGAAGTAGATGCTAG



consensusID : consensus_297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [TCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGG]

[+] EMBL BI513500             [TCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATATGATTGATGG]


>consensus_297#1 TCGCTTTTTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAA GTTGCCGAAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTT TTATTGACTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCA GAATCTCGGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAAT GGATGGGGCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGCTAAGACTAAAAGAATGGAA ACAAAGTTGCGTTGCACAGACTTGATCGTACTTGGTTTACCATGGAAAACAACCGAGCAG AACTTGCGAGAGTATTTTGAAACATTTGGAGAAGTACTCATGGCACAAGTTAAAAAAGAT GCAAAATCAGGACAAAGCAAAGGATTTGGCTTTATTAGATTTGGGAGTTATGAATCCCAA TTAAGATGTCTTGCTCAACGACATATGATTGATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_297#0      GTGTTTGTTGTGTTGTACGAAATTTTTATTCTCTTTTTTGAAAAAAGAAACGTTCGCTTT 60
consensus_297#1      -----------------------------------------------------TCGCTTT 7
                                                                          *******

consensus_297#0      TTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCG 120
consensus_297#1      TTTTCGGAAAGATCGTACGTTTTGAAGAGAAAATTATGTCGTCGTACATCCAAGTTGCCG 67
                     ************************************************************

consensus_297#0      AAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGA 180
consensus_297#1      AAGATGAAGGCGATGAACCGATCGAATTGCCAACGGAAGACGATAGTACACTTTTATTGA 127
                     ************************************************************

consensus_297#0      CTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTC 240
consensus_297#1      CTACCGTAACCGCCCAGTTTCCCGGAACGTGTGGCCTGAAATATCGCAATCCAGAATCTC 187
                     ************************************************************

consensus_297#0      GGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGG 300
consensus_297#1      GGACGATGCGCGGCATTCGTCTTGTTGACGGACGTCTTCATCCGCCCGAAAATGGATGGG 247
                     ************************************************************

consensus_297#0      GCAAGGCAATTTACTTTTGTGTTTTTCCAAAAGAGAACAAACGTAAATCTGATGACAATT 360
consensus_297#1      GCAAGGCAATTTACTTTTGTGTTTTTCCAAAAG--------------------------- 280
                     *********************************                           

consensus_297#0      TGGAAAATTCCACAGCTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGA 420
consensus_297#1      ---------------CTAAGACTAAAAGAATGGAAACAAAGTTGCGTTGCACAGACTTGA 325
                                    *********************************************

consensus_297#0      TCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACAT 480
consensus_297#1      TCGTACTTGGTTTACCATGGAAAACAACCGAGCAGAACTTGCGAGAGTATTTTGAAACAT 385
                     ************************************************************

consensus_297#0      TTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGAT 540
consensus_297#1      TTGGAGAAGTACTCATGGCACAAGTTAAAAAAGATGCAAAATCAGGACAAAGCAAAGGAT 445
                     ************************************************************

consensus_297#0      TTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATA 600
consensus_297#1      TTGGCTTTATTAGATTTGGGAGTTATGAATCCCAATTAAGATGTCTTGCTCAACGACATA 505
                     ************************************************************

consensus_297#0      TGATTGATGGGCGATGGTGTGATGTTAAGGTTCCCAGGAGGAAGAATATTGATGGCTTAA 660
consensus_297#1      TGATTGATGG-------------------------------------------------- 515
                     **********                                                  

consensus_297#0      TGATGGCTCGTCAGTATGATACGAGCAAACACAATGAATGCTACCGTCCTATACCGGTTC 720
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ATACGCCGAGTAATCGACGGGTACCTGTGGCGAAACCTTATATCAACTTAAATACATCTG 780
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      AAGCTGCTAATACACCTAGATACGATTCGGAGTATGATTATAAAACCACGCATTATCCGT 840
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      CGTACCCTCCCAATTATCCGTACGACGATAACAATAAATACAAATATGAAGGCCAGAACT 900
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ATAATACGTATGAGAAACCTAATTACCCATCTTACGAGGATCCTGGGTATGACACACGTA 960
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ATTATATGGTTCAACATACAACTGCAGCACCCCAGAATCCCAGCGCTACTTATCCGTCCG 1020
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ACACAGAATACACAAGATACACCAATTATGAAGGACGTGCTGTGTATCCAGTGATGGAAA 1080
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ATCCGGATTACACGGAGAAAGTGAGATACAATTATGGTTATGATCGAAACTATTACGAGG 1140
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      CGGACGGTCGTTACGCGTCCACAGATTGTAGATATACACTGGATGTCCGATATCCAGATA 1200
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      CTAGNCACGCGGACAATCGAATTCAAGCTGATAGTAGAGAGGCTGATTGTAGATATCCGN 1260
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      TGGACAATCGTGATATGGATAGAAGATACGTGGTTGATGGTAGAGATCCAGATGGCAGGT 1320
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ACGCTATCGAGAACAGAGAAGTAGATGCTAG 1351
consensus_297#1      -------------------------------
                                                    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)