These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATTTACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGATTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCGGTAAATTACA] [+] EMBL BI504332 [TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATTTACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGATTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCGGTAAATTACA] consensusID : consensus_334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence [TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCAACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCAAGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTT] [-] EMBL BI506780 [TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCAACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGATGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCT ] [+] EMBL BI504645 [ ACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCAAGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTT] consensusID : consensus_334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence [AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAATTGACCTTGGTCAAC] [+] EMBL BI503563 [AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGATATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCATTCAACCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAATTGACCTTGGTCAAC] [-] EMBL BI507318 [ CATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_334#0 TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATT 60 consensus_334#2 ---------------AACGAGGATGAAGAT-ATCCATGAAGAATAT-CAAGATAATGATC 43 consensus_334#1 -TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGT--AGGTTTCCAATT 57 * * ** * * * * ** consensus_334#0 TACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGA 120 consensus_334#2 AAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAA 103 consensus_334#1 TCAACACACCGCTCTTCA----GGGTCTCTTC---CAGAACATCACGTTCAGTTGCGAGG 110 * * * * * * * * * * consensus_334#0 TTGCACAGCCTTGGAA-ACAC---GCGCAAAAGATGATTTCGTGGCTTG--TTGGACAAG 174 consensus_334#2 GACCGGAAGCTTGTGA-TCAA---GAGGTATATTTGTATTTACGAAATGCATCTTTCGAC 159 consensus_334#1 GTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATA 170 * ** * ** * * * * * * * consensus_334#0 CAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATAT-GCTTATCCA 233 consensus_334#2 ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCG 219 consensus_334#1 ATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTC--TTCGGTGA 228 * * * * * ** * consensus_334#0 AACGAGGATGAAGAT-ATCCATGAAG--AATATCAAGATAA--TGATCAAGAGAAACCAC 288 consensus_334#2 GTAAATTACAGCAAT-ATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTAT 278 consensus_334#1 ACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAAT 288 * ** ** * * * * * * consensus_334#0 CAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTT 348 consensus_334#2 GCCTCCTTTGAGCGTCATTCCACAAGAAA----TAATATATGAGAATAACTCGCTAGTAT 334 consensus_334#1 ATTCGATTATCAAGCAGTTTGTTTCAAGAG---TACACAAACTAGTAATGATGGAAGTAT 345 * ** * * * * * * ** * consensus_334#0 GTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTC----AATTT 404 consensus_334#2 GTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGC--AGTCA 392 consensus_334#1 TTTATTGGCGCCTTGGAAACACG-CGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAG 404 * * * * * * ** * consensus_334#0 TTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGG-TATATTTGTATTTAC 463 consensus_334#2 TTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATAT 452 consensus_334#1 TCTGGGCTTGGGCCAAAGC-TGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAAC 463 * * * * * * * * * consensus_334#0 GAAATGCATCTTTCGAC-ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGG 522 consensus_334#2 CTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAA---TTGACCTTGG 509 consensus_334#1 GAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAAC-CACCAATTAC 522 * * *** * *** consensus_334#0 CCATATATCGTTCAACCGGTAAATTACA 550 consensus_334#2 TCAAC----------------------- 514 consensus_334#1 TGAGAAATTATTCGATCAAAAAGTT--- 547 * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |