These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1190 fasta sequence [ACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGATCCGCGGCAGCGACTGGAGACCGTCTCTGTCAAATGGAAGCTATGGACGGCGCAGCAAGATGTCTTGAGGCTCTTCGATTACAACATAAAATATGCAATTGTCGTCCTCTTGAATTCAATACTAGGCTGCTCGAAGTAGCTGGATCAGTTGGTGCGAAGTTCCTGGTACGAACGGTGAGATCGAGGCTTTCGCGTATTTATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAAAGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCTTTTGGCCTTGAAACCGATTCCTTGGAAGCATTACCTTGTTCTCATATATTACATGCCAGGTGTGCATACGACATTTTAAAAAAACGTGACAAAAAGAAGAAACGTTTGTGTCCCGACTGTCACAAATCCGTTAGTTCACGATTGTACCTGCATTGCGAAGATCCTCATGGCATGAATACTTTGAATCACAGTTCCTTGAGTCTGGCATCGTTGAGAGCCAGCAGTTTAGCCACGTTGGACGACTGTCACGCTACTAGCAGTGTTTAAATCTGATAATATCCGTTACATCAACTTACTTATTTACTTATGTACTTAGGATTTTGTTTACTTAGAAATTTTTTGAGCAATGTGTTCTTTGTAATGATCACCACTAATATTTCACAAATGAATGTAAACAAAGCA] [+] EMBL BI514042 [ACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGATCCG ] [+] EMBL BI514135 [ACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGAT ] [+] EMBL BI513537 [ CATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGACGCCCACGATTACTGTTCGGAGGCAACACGATTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGATATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGATCCGCGGCAGCGACTGGAGACCGTCTCTGTCAAATGGAAGCTATGGACGGCGCAGCAAGATGTCTTGAGGCTCTTCGATTACAACATAAAATATGCAATTGTCGTCCTCTTGAATTCAATACTAGGCTGCTCGAAGTAGCTGGATCAGTTGGTGCGAAGTTCCTGGTACGAACGGTGAGATCGAGGCTTTCGCGTATTTATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAAAGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCTTTTGGCCTTGAAACCGATTC ] [+] EMBL BI513493 [ ATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAAAGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCTTTTGGCCTTGAAACCGATTCCTTGGAAGCATTACCTTGTTCTCATATATTACATGCCAGGTGTGCATACGACATTTTAAAAAAACGTGACAAAAAGAAGAAACGTTTGTGTCCCGACTGTCACAAATCCGTTAGTTCACGATTGTACCTGCATTGCGAAGATCCTCATGGCATGAATACTTTGAATCACAGTTCCTTGAGTCTGGCATCGTTGAGAGCCAGCAGTTTAGCCACGTTGGACGACTGTCACGCTACTAGCAGTGTTTAAATCTGATAATATCCGTTACATCAACTTACTTATTTACTTATGTACTTAGGATTTTGTTTACTTAGAAATTTTTTGAGCAATGTGTTCTTTGTAATGATCACCACTAATATTTCACAAATGAATGTAAACAAAGCA] consensusID : consensus_346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [AAAGATTGGGTGCATTAGATAGGGCTTTGGACTATGCGAGACACAGCTTGTACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGTAGGCAGTAACTTTCTTTCTACAACCCCCATATTCAACTGTCACGTATCCACTTGGACCTGTTTAT] [+] EMBL BI515794 [AAAGATTGGGTGCATTAGATAGGGCTTTGGACTATGCGAGACACAGCTTGTACAATGAATGCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAATTAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGATTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGATTACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCTTGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGGCACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGTAGGCAGTAACTTTCTTTCTACAACCCCCATATTCAACTGTCACGTATCCACTTGGACCTGTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_346#0 ---------------------------------------------------ACAATGAAT 9 consensus_346#1 AAAGATTGGGTGCATTAGATAGGGCTTTGGACTATGCGAGACACAGCTTGTACAATGAAT 60 ********* consensus_346#0 GCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAAT 69 consensus_346#1 GCGACCAATGTGCGACTGCTGGATTGGTTCATTTGACCGTAGGCAGAGTTCATTTGGAAT 120 ************************************************************ consensus_346#0 TAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGA 129 consensus_346#1 TAGCAGGATTTTGTAAAGCTTTAGAAGCTTTTCAAAGAGCTCATAAAATTGCTCATTCGA 180 ************************************************************ consensus_346#0 TTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGAT 189 consensus_346#1 TTCAAGACCCGTCATTGGAATTGCAGGTATACGTAGGTTTATCGGAGCTATTCTGCAGAT 240 ************************************************************ consensus_346#0 TACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCT 249 consensus_346#1 TACACGATGCTGATAAGAGTGCTAGGTATGCGGCTAGAGCTTACGACCTCTCGAGAAGCT 300 ************************************************************ consensus_346#0 TGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGG 309 consensus_346#1 TGCAACTGGGCGACTTAAATTCTCGACATCATAGAGCAGCTCTTCTTCAGATGGCAGCGG 360 ************************************************************ consensus_346#0 CACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGG-AGGCAACACGA 368 consensus_346#1 CACTCCGGAAAAAAGGAGAACTCGGTGATGCCCACGATTACTGTTCGGTAGGCAGTAACT 420 ************************************************ ***** * consensus_346#0 TTATCGTTAGTTTCTGGAGATCAAGCTAGTTATGCCAGGAGTATACGAATAATGGGAGAT 428 consensus_346#1 TTCTTTCTACAACCCCCATATTCAACT------GTCACGTATCCAC------TTGGACCT 468 ** * ** * * ** * ** * ** * * ** * *** * consensus_346#0 ATTTATAGAAAAAAGTCCGATATAAACAAAGCATTTCGACAGTATGAAAGTGCGATGGGA 488 consensus_346#1 GTTTAT------------------------------------------------------ 474 ***** consensus_346#0 TCCGCGGCAGCGACTGGAGACCGTCTCTGTCAAATGGAAGCTATGGACGGCGCAGCAAGA 548 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TGTCTTGAGGCTCTTCGATTACAACATAAAATATGCAATTGTCGTCCTCTTGAATTCAAT 608 consensus_346#1 ------------------------------------------------------------ consensus_346#0 ACTAGGCTGCTCGAAGTAGCTGGATCAGTTGGTGCGAAGTTCCTGGTACGAACGGTGAGA 668 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TCGAGGCTTTCGCGTATTTATGATTCACTTGGAGATGAAGAACAAAAGACTCATCACGAA 728 consensus_346#1 ------------------------------------------------------------ consensus_346#0 AGATTAGCTACGGCAATGGAAGAAGATTTAGAATTGCGATGTGGTAGCTGTAACGAGCCT 788 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTTGGCCTTGAAACCGATTCCTTGGAAGCATTACCTTGTTCTCATATATTACATGCCAGG 848 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TGTGCATACGACATTTTAAAAAAACGTGACAAAAAGAAGAAACGTTTGTGTCCCGACTGT 908 consensus_346#1 ------------------------------------------------------------ consensus_346#0 CACAAATCCGTTAGTTCACGATTGTACCTGCATTGCGAAGATCCTCATGGCATGAATACT 968 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTGAATCACAGTTCCTTGAGTCTGGCATCGTTGAGAGCCAGCAGTTTAGCCACGTTGGAC 1028 consensus_346#1 ------------------------------------------------------------ consensus_346#0 GACTGTCACGCTACTAGCAGTGTTTAAATCTGATAATATCCGTTACATCAACTTACTTAT 1088 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTACTTATGTACTTAGGATTTTGTTTACTTAGAAATTTTTTGAGCAATGTGTTCTTTGTA 1148 consensus_346#1 ------------------------------------------------------------ consensus_346#0 ATGATCACCACTAATATTTCACAAATGAATGTAAACAAAGCA 1190 consensus_346#1 ------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |