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Apis mellifera
cluster # 356 cluster # 356       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_356#0 length = 659 sequences # 4  
consensus_356#1 length = 571 sequences # 1  

consensusID : consensus_356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 659
fasta sequence
                              [GGAGGCAGGCGTACTTATCGTTTCGATTTATCGAAGCATTTAACGACATTATTCGTAAGAAAACAAATCCAATTTGTAGAATGTAACATTCATCGATAATATTCTTTTGTTAAGTAGAAAACGAATGATACAAATACAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATCAATTAAAGAATTAATAACAGCGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAATAGATTTATTCAAGATAGGCTACAGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTGCTTGGAGATCGATTGGAAAAGCGATGGAAAATTGAGATGGAAAATTCGAAAAAAAAA]

[+] EMBL BI507860             [GGAGGCAGGCGTACTTATCGTTTCGATTTATCGAAGCATTTAACGACATTATTCGTAAGAAAACAAATCCAATTTGTAGAATGTAACATTCATCGATAATATTCTTTTGTTAAGTAGAAAACGAATGATACAAATACAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCG   ACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATCAATTAAAGAATTAATAACAGTGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAATAGATTTATTCAAGATAG                                                                                                                          ]
[+] EMBL BI505028             [GGAGGCAGGCGTACTTATCGTTTCGATTTATCGAAGCATTTAACGACATTATTCGTAAGAAAACAAATCCAATTTGTAGAATGTAACATTCATCGATAATATTCTTTTGTTAAGTAGAAAACGAATGATACAAATACAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCG   ACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATCAATTAAAGAATTAATAACAGTGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAA                                                                                                                                            ]
[+] EMBL BI506389             [                                                                                                                                        CAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATCAATTAAAGAATTAATAACAGCGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAATAGATTTATTCAAGATAGGCTACAGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTGCTTGGAGATCGATTGGAAAAGCGATGGAAAATTGAGATGGAAAATTCGAAAAAAAAA]
[+] EMBL BI509268             [                                                                                                                                        CAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATCAATTAAAGAATTAATAACAGCGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAATAGATTTATTCAAGATAGGCTACAGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTGCTTGGAGATCGATTGGAAAAGCGATGGAAAATTGAGATGGAAAATTCGAAAAAAAAA]


>consensus_356#0 GGAGGCAGGCGTACTTATCGTTTCGATTTATCGAAGCATTTAACGACATTATTCGTAAGA AAACAAATCCAATTTGTAGAATGTAACATTCATCGATAATATTCTTTTGTTAAGTAGAAA ACGAATGATACAAATACAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATA CAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGA ACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCC TTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATT CGTTCGTTAAGAGGACTCTCAAGTAGATATCAATTAAAGAATTAATAACAGCGGGTTAAT GCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAA AAGCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAATAGATTTATTCAAGATAGGCT ACAGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATG TGCTTGGAGATCGATTGGAAAAGCGATGGAAAATTGAGATGGAAAATTCGAAAAAAAAA



consensusID : consensus_356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [ACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATGTAAGCCCCTTGAATGATAAAATCGTCTTTGTTTAAGAAATCAATATCAAGTGTTCACGATTTTCTTATTTTTTTCACTCCCTTAAAACGAATTATACTTGAATACTTTTTTCACTAGCAATTAAAGAATTAATAACAGTGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGNTGGACAATAGATTTATTCAAGATAGGCTACAGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTG]

[+] EMBL BI503056             [ACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATATGTAAGCCCCTTGAATGATAAAATCGTCTTTGTTTAAGAAATCAATATCAAGTGTTCACGATTTTCTTATTTTTTTCACTCCCTTAAAACGAATTATACTTGAATACTTTTTTCACTAGCAATTAAAGAATTAATAACAGTGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTGNTGGACAATAGATTTATTCAAGATAGGCTACAGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTG]


>consensus_356#1 ACAGGTGTACCTTTTATTTTCCTCCACGATACAGTTCCATGCGAAGACAAAGAACGATTC CGGATAGTGGATTTGGTTGAACTATCATCGAACGGGATTTATCTATCTGGAATATCGACA ACGTGAATTTAGTGATTGCTCTCAAGATTCCTTATTGTGTCTGTGTCGTGTCAATTTTCA AGTGATTGCTCAATTAGTCAGCAATCAGATTCGTTCGTTAAGAGGACTCTCAAGTAGATA TGTAAGCCCCTTGAATGATAAAATCGTCTTTGTTTAAGAAATCAATATCAAGTGTTCACG ATTTTCTTATTTTTTTCACTCCCTTAAAACGAATTATACTTGAATACTTTTTTCACTAGC AATTAAAGAATTAATAACAGTGGGTTAATGCAGCATACAGAAGAAGATGGACACAACCAA TTTGAAATCGAAACCAAATCCACGAGAAAAAGCAAATTTACTATCAGTGTTACTTTGGTG NTGGACAATAGATTTATTCAAGATAGGCTACAGAAAGATTCTGCAAACCGATGATTTATA TACTCCTTTGAAGACGGATCGATCGAATGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_356#0      GGAGGCAGGCGTACTTATCGTTTCGATTTATCGAAGCATTTAACGACATTATTCGTAAGA 60
consensus_356#1      ------------------------------------------------------------
                                                                                 

consensus_356#0      AAACAAATCCAATTTGTAGAATGTAACATTCATCGATAATATTCTTTTGTTAAGTAGAAA 120
consensus_356#1      ------------------------------------------------------------
                                                                                 

consensus_356#0      ACGAATGATACAAATACAGAAAGTGTTCAACAGGTGTACCTTTTATTTTCCTCCACGATA 180
consensus_356#1      -----------------------------ACAGGTGTACCTTTTATTTTCCTCCACGATA 31
                                                  *******************************

consensus_356#0      CAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGA 240
consensus_356#1      CAGTTCCATGCGAAGACAAAGAACGATTCCGGATAGTGGATTTGGTTGAACTATCATCGA 91
                     ************************************************************

consensus_356#0      ACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCC 300
consensus_356#1      ACGGGATTTATCTATCTGGAATATCGACAACGTGAATTTAGTGATTGCTCTCAAGATTCC 151
                     ************************************************************

consensus_356#0      TTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATT 360
consensus_356#1      TTATTGTGTCTGTGTCGTGTCAATTTTCAAGTGATTGCTCAATTAGTCAGCAATCAGATT 211
                     ************************************************************

consensus_356#0      CGTTCGTTAAGAGGACTCTCAAGTAGATAT------------------------------ 390
consensus_356#1      CGTTCGTTAAGAGGACTCTCAAGTAGATATGTAAGCCCCTTGAATGATAAAATCGTCTTT 271
                     ******************************                              

consensus_356#0      ------------------------------------------------------------
consensus_356#1      GTTTAAGAAATCAATATCAAGTGTTCACGATTTTCTTATTTTTTTCACTCCCTTAAAACG 331
                                                                                 

consensus_356#0      ----------------------------CAATTAAAGAATTAATAACAGCGGGTTAATGC 422
consensus_356#1      AATTATACTTGAATACTTTTTTCACTAGCAATTAAAGAATTAATAACAGTGGGTTAATGC 391
                                                 ********************* **********

consensus_356#0      AGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAA 482
consensus_356#1      AGCATACAGAAGAAGATGGACACAACCAATTTGAAATCGAAACCAAATCCACGAGAAAAA 451
                     ************************************************************

consensus_356#0      GCAAATTTACTATCAGTGTTACTTTGGTGGTGGACAATAGATTTATTCAAGATAGGCTAC 542
consensus_356#1      GCAAATTTACTATCAGTGTTACTTTGGTGNTGGACAATAGATTTATTCAAGATAGGCTAC 511
                     ***************************** ******************************

consensus_356#0      AGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTG 602
consensus_356#1      AGAAAGATTCTGCAAACCGATGATTTATATACTCCTTTGAAGACGGATCGATCGAATGTG 571
                     ************************************************************

consensus_356#0      CTTGGAGATCGATTGGAAAAGCGATGGAAAATTGAGATGGAAAATTCGAAAAAAAAA 659
consensus_356#1      ---------------------------------------------------------
                                                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)