These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_41#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1393 fasta sequence [CCGTTTTCCTCGTGCATCGAGTGCGAAATTATCCACGCGAAACACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTCTTTTTTTCGAGCACGGGTGGACAGCCAGACATGCCGTACTCGAAGTGTAGAACGTTTCTCCGTTTCTTCGCGATTTGTTCGTTCTCGACTTGTGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCCCGATCGGGGGAGAGAAACGGCGAATCCTGCGTTGGAGGGCGGGCCGAGTGGAGGAGGAATTGGCGAATTGGCGAAATCGATACAATTAGCCAAGAAAATCAGTTCCATTAATTCGAGAGACGATTTTCTTAAATTAGTCAAAGATGTGCCGAAGGATATATCTTTCTTCTCCTCGAGCAGTAGAATGGGAGAAACTGAACGTTCGAATGCCGAGCGACCAAATCAAGCTTTGTGTATGCCTGAATTGCAAACAGTTCCTCTATTAGAAAATGAGCCATCTGTTATTTATTATCCAACTTGCACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAACGGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAATTCTTGAATCCAGTGGTAAATTAAAATATCAAGGCAAACGTATCGTACCGATAGAGGAGCACACGCAATGCACGTGTGACTGCAAAATAAAGGAGACGGACTGTAACAAGAAACAGTCTTATGTACCAGAGGAATGTACATGTGCGTGCAACAACGTCGATGAACAGAAAAAGTGTAATGAAAGCAACATAAAAATGTGGCACCCAGATCTTTGTAGCTGTTTTTGCAGAGAAACACAGGAATGTTCAACTGGTTTTTATTTCGACCAAAATTCATGCAGATGCCTGCAAGTACCGCTATCTAGAACATGGTTTACATCCACAAAAGGTTCTGATTATAGATTCGGACAAACACAAAGACCAGATAATGTACCACCGGTAATAATTGCCCTAGATTCAGATGATCCTAGAAGAAAACCTAAACCAGATCCAGAATAATCAGATTGGTCATTTATAGGCTAAATTTTAAAACAATTTAATTTCTTATCTTTGTGCCATTTTGTTATACATAAAAGTATTGATATTATTTATGTATTAATATTAATATTAATATTAGTTATTGCAAAAAATAAATGAATGTATTTTTATATATCAAAAAATATTGT] [+] EMBL BI507829 [CCGTTTTCCTCGTGCATCGAGTGCGAAATTATCCACGCGAAACACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTCTTTTTTTCGAGCACGGGTGGACAGCCAGACATGCCGTACTCGAAa ] [+] EMBL BI515775 [ GAAACACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTCTTTTTTTCGAGCACGGGTGGACAGCCAGACATGCCGTACTCTAAGTGTAGAACGTTTCTCCGTTTCTTCGCGATTTGTTCGTTCTCGATTTGTGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCCCGATCGGGGGAGAGAAACGGCGAATCCTGCGTTGGAGGGCGGGCCGAGTGGAGGAGGAATTGGCGAATTGGCGAAATCGATACAATTAGCCAAGAAAATCAGTTCCATTAATTCGAGAGACGATTTTCTTAAATT ] [+] EMBL BI515817 [ CGACTTGTGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCCCGATCGGGGGAGAGAAACGGCGAATCCTGCGTTGGAGGGCGGGCCGAGTGGAGGAGGAATTGGCGAATTGGCGAAATCGATACAATTAGCCAAGAAAATCAGTTCCATTAATTCGAGAGACGATTTTCTTAAATTAGTCAAAGATGTGCCGAAGGATATATCTTTCTTCTCCTCGAGCAGTAGAATGGGAGAAACTGAACGTTCGAATGCCGAGCGACCAAATCAAGCTTTGTGTATGCCTGAATTGCAAACAGTTCCTCTATTAGAAAATGAGCCATCTGTTATTTATTATCCAACTTGCACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAACGGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAATTCTTGAATCCAGTGGT ] [+] EMBL BI505579 [ TTAAATTAGTCAAAGATGTGCCGAAGGATATATCTTTCTTCTCCTCGAGCAGTAGAATGGGAGAAACTGAACGTTCGAATGCCGAGCGACCAAATCAAGCTTTGTGTATGCCTGAATTGCAAACAGTTCCTCTATTAGAAAATGAGCCATCTGTTATTTATTATCCAACTTGCACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAACGGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAATTCTTGAATCCAGTGGTAAATTAAAATATCAAGGCAAACGTATCGTACCGATAGAGGAGCACACGCAATGCACGTGTGACTGCAAAATAAAGGAGACGTACTGTAACAAGAAACAGTCTTATGTACCAGAGGAATGTACATGTGCGTGCAACAACGTCGATGAACAGAAAAAGTGTAATGAAAGCAACATAAAAATGTGGCACCCAGATCTTTGTAGCTGTTTTTGCAGAGAAACACAGGAATGTTCAACTGGTTTTTATTTCGA ] [+] EMBL BI502979 [ ATTGCAAACAGTTCCTCTATTAGAAAATGAGCCATCTGTTATTTATTATCCAACTTGCACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAACGGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAATTCTTGAATCCAGTGGTAAATTAAAATATCAAGGCAAACGTATCGTACCGATAGAGGAGCACACGCAATGCACGTGTGACTGCAAAATAAAGGAGACGGACTGTAACAAGAAACAGTCTTATGTACCAGAGGAATGTACATGTGCGTGCAACAACGTCGATGAACAGAAAAAGTGTAATGAAAGCAACATAAAAATGTGGCACCCAGATCTTTGTAGCTGTTTTTGCAGAGAAACACAGGAATGTTCAACTGGTTTTTATTTCGACCAAAATTCATGCAGATGCCTGCAAGTACCGCTATCTAGAACATGGTTTACATCCACAAAAGGTTCTGATTATAGATTCGGACAAACACAAAGACCAGATAATGTACCACCGGTAATAATTGCCCTAGATTCAGATGATCCTAGAAGAAAACCTAAACCAGATCCAGAATAATCAG ] [+] EMBL BE844375 [ ATTTATTATCCAACTTGCACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAACGGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAATTCTTGAATCCAGTGGTAAATTAAAATATCAAGGCAAACGTATCGTACCGATAGAGGAGCACACGCAATGCACGTGTGACTGCAAAATAAAGGAGACGGACTGTAACAAGAAACAGTCTTATGTACCAGAGGAATGTACATGTGCGTGCAACAACGTCGATGAACAGAAAAAGTGTAATGAAAGCAACATAAAAATGTGGCACCCAGATCTTTGTAGCTGTTTTTGCAGAGAAACACAGGAATGTTCAACTGGTTTTTATTTCGACCAAAATTCAT ATGCCTGCAAGTACCGCTATCTAGAACATGGTTTACATCCACAAAAGGTTCTGATTATAGATTCGGACAAACACAAAGACCAGATAATGTACCACCGGTAATAATTGCCCTAGATTCAGATGATCCTAGAAGAAAACCTAAACCAGATCCAGAATAATCAGATTGGTCATTTATAGGCTAAATTTTAAAACAATTTAATTTCTTATCTTTGTGCCATTTTGTTATACATAAAAGTATTGATATTATTTATGTATTAATATTAATATTAATATTAGTTATTGCAAAAAATAAATGAATGTATTTTTATATATCAAAAAATATTGT] [+] EMBL BI515446 [ GCACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAACGGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAGTTCTTGAATCCAGTGGTAAATTAAAGTATCAAGGCAAACGTATCGTACCGATAGAGGAGCACACGCAATGCACGTGTGACTGCAAAATAAAGGAGACGGACTGTAACAAGAAACAGTCTTATGTACCAGAGGAATGTACATGTGCGTGCAACAACGTCGATGAACAGAAAAAGTGTAATGAAAGCAACATAAAAATGTGGCACCCAGATCTTTGTAGCTGTTTTTGCAGAGAAACACAGGAATGTTCAACTGGTTTTTATTTCGACCAAAATTCATGCAGATGCCTG ] consensusID : consensus_41#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 435 fasta sequence [TCAGGTGCGACTTTCCTTCCGTTTTCCTCGTGCATCGAGTGCGAAACACGCGAAACACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTCC-TTTTTTCGAGCACGGGTGGAGCACAGGTGAACAGCCAGACATGCCGTACTCTAAGTGTAGAACGTTTCTCCGTTTCTTCGCGATTTGTTCGTTCTCGACTTGTGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCCCGATCGGGGGAGAGAAACGG] [+] EMBL BI512686 [TCAGGTGCGACTTTCCTTCCGTTTTCCTCGTGCATCGAGTGCGAAACACGCGAAACTCGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTTC TTTTTTCGAGCACGGGTGGAGCACAGGTGAACAGCCAGACATGCCGTACTCTAAGTGTAGAACGTTTCTCCGTTTCTTCGCGATTTGTTCGTTCTCGACTTGTGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCCCGATCGGGGGAGAGAAACGG] [+] EMBL BI502986 [ TTCCGTTTTCCTCGTGCATCGAGTGCGAAACACGCGAAACACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTCCTTTTTTTCGAGCACGGGTGGAGCACAGGTGAACAGCCAGACATGCCGTACTCTAAGTG ] [+] EMBL BI509751 [ CTCGTGCATCGAGTGCGAAACACG CGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTACCGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTGTTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAGAACTCGATTCCCTTTTCT TTTTTTCGAGCACGGGTGGAGCACAGGTGGACAGCCGTGCTCGaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_41#0 ------------------CCGTTTTCCTCGTGCATCGAGTGCGAAATTATCCACGCGAAA 42 consensus_41#1 TCAGGTGCGACTTTCCTTCCGTTTTCCTCGTGCATCGAGTGCGAAA-----CACGCGAAA 55 **************************** ********* consensus_41#0 CACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTAC 102 consensus_41#1 CACGTCGGGTGGATAAACACGATCGTGTTGCAAACACGATCACCGTTTCCCCGAATTTAC 115 ************************************************************ consensus_41#0 CGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTG 162 consensus_41#1 CGCCGCAATATTGGATCGCCACGAGTTGCTGGCCGATCATCTGGGCCACGTGTTACCGTG 175 ************************************************************ consensus_41#0 TTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAG 222 consensus_41#1 TTTTCAGAGAAGAGTGGCAACACGGTGAATATTTTATGACCGGAGGATAGGATAGGATAG 235 ************************************************************ consensus_41#0 AACTCGATTCCCTTTTCTTTTTTTCGAGCACGGGTGGA-----------CAGCCAGACAT 271 consensus_41#1 AACTCGATTCCCTTTTCCTTTTTTCGAGCACGGGTGGAGCACAGGTGAACAGCCAGACAT 295 ***************** ******************** *********** consensus_41#0 GCCGTACTCGAAGTGTAGAACGTTTCTCCGTTTCTTCGCGATTTGTTCGTTCTCGACTTG 331 consensus_41#1 GCCGTACTCTAAGTGTAGAACGTTTCTCCGTTTCTTCGCGATTTGTTCGTTCTCGACTTG 355 ********* ************************************************** consensus_41#0 TGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCC 391 consensus_41#1 TGGACTGGTGATGGCTCAACTCGAGGATACCAGATACCCCGACCAAAGGATAGTGTTCCC 415 ************************************************************ consensus_41#0 CGATCGGGGGAGAGAAACGGCGAATCCTGCGTTGGAGGGCGGGCCGAGTGGAGGAGGAAT 451 consensus_41#1 CGATCGGGGGAGAGAAACGG---------------------------------------- 435 ******************** consensus_41#0 TGGCGAATTGGCGAAATCGATACAATTAGCCAAGAAAATCAGTTCCATTAATTCGAGAGA 511 consensus_41#1 ------------------------------------------------------------ consensus_41#0 CGATTTTCTTAAATTAGTCAAAGATGTGCCGAAGGATATATCTTTCTTCTCCTCGAGCAG 571 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TAGAATGGGAGAAACTGAACGTTCGAATGCCGAGCGACCAAATCAAGCTTTGTGTATGCC 631 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TGAATTGCAAACAGTTCCTCTATTAGAAAATGAGCCATCTGTTATTTATTATCCAACTTG 691 consensus_41#1 ------------------------------------------------------------ consensus_41#0 CACACGGATCAAAAGATGCGGAGGTTGTTGTACACACTCACTCCTCTCTTGTCAACCAAC 751 consensus_41#1 ------------------------------------------------------------ consensus_41#0 GGCTACGGAAATTCGAAATTTCGAGATTCTTGTGACAATTCTTGAATCCAGTGGTAAATT 811 consensus_41#1 ------------------------------------------------------------ consensus_41#0 AAAATATCAAGGCAAACGTATCGTACCGATAGAGGAGCACACGCAATGCACGTGTGACTG 871 consensus_41#1 ------------------------------------------------------------ consensus_41#0 CAAAATAAAGGAGACGGACTGTAACAAGAAACAGTCTTATGTACCAGAGGAATGTACATG 931 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TGCGTGCAACAACGTCGATGAACAGAAAAAGTGTAATGAAAGCAACATAAAAATGTGGCA 991 consensus_41#1 ------------------------------------------------------------ consensus_41#0 CCCAGATCTTTGTAGCTGTTTTTGCAGAGAAACACAGGAATGTTCAACTGGTTTTTATTT 1051 consensus_41#1 ------------------------------------------------------------ consensus_41#0 CGACCAAAATTCATGCAGATGCCTGCAAGTACCGCTATCTAGAACATGGTTTACATCCAC 1111 consensus_41#1 ------------------------------------------------------------ consensus_41#0 AAAAGGTTCTGATTATAGATTCGGACAAACACAAAGACCAGATAATGTACCACCGGTAAT 1171 consensus_41#1 ------------------------------------------------------------ consensus_41#0 AATTGCCCTAGATTCAGATGATCCTAGAAGAAAACCTAAACCAGATCCAGAATAATCAGA 1231 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TTGGTCATTTATAGGCTAAATTTTAAAACAATTTAATTTCTTATCTTTGTGCCATTTTGT 1291 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TATACATAAAAGTATTGATATTATTTATGTATTAATATTAATATTAATATTAGTTATTGC 1351 consensus_41#1 ------------------------------------------------------------ consensus_41#0 AAAAAATAAATGAATGTATTTTTATATATCAAAAAATATTGT 1393 consensus_41#1 ------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |