These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 917 fasta sequence [TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGTATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACCAGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGCATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACGTGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAA] [-] EMBL BI510300 [TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGTATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACCAGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGCATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCTGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGA ] [-] EMBL BI516955 [ GTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACGTGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGAT ] [+] EMBL BI512548 [ AGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAA] consensusID : consensus_445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTCAATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTAAATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTATGATTCCATGAGATACTTTCTTATGGATTCT] [+] EMBL BI512205 [CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTCAATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTAAATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTATGATTCCATGAGATACTTTCTTATGGATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_445#0 TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGT 60 consensus_445#1 ------------------------------------------------------------ consensus_445#0 ATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACC 120 consensus_445#1 ------------------------------------------------------------ consensus_445#0 AGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGC 180 consensus_445#1 ------------------------------------------------------------ consensus_445#0 ATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGC 240 consensus_445#1 ------------------------------------------------------------ consensus_445#0 AGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCG 300 consensus_445#1 ------------------------------------------------------------ consensus_445#0 GCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACG 360 consensus_445#1 -----------------------------------------------CTTCTCCTTTTTC 13 ** * consensus_445#0 TGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAAC 420 consensus_445#1 TGGGTTAATGAAGAAACC---ATTCTTAATACGTAATAAAATGTATAAATTAAACGGAA- 69 ** ** * * ** ** * * ***** * * * ** consensus_445#0 TCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTC 480 consensus_445#1 --AGTTTAATTGGTG--ATTCA-----AGTTTCTTAATT-------TCACTTTAGTTCAC 113 * ** *** ** ** ** ** ** **** * ** * * consensus_445#0 CTCCTTG-TGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAG 539 consensus_445#1 CAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAA 173 * * *** * * * * ** * * * * * *** consensus_445#0 CTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTT 599 consensus_445#1 TTCCG---TTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGT-TTCCCCTC 229 * ** * * * ** * ** ** * ** ** * * ** ** consensus_445#0 GCTGATTGGACGCTGACCAGTCGAT-AGTTGTCGAACAATCTTGATCTGTGAAATGAATA 658 consensus_445#1 TCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGA---GAGAGGTTAAGT 286 ** ** * * * ** * * * * ***** * *** * ** * ** consensus_445#0 TCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCT 718 consensus_445#1 TCTTGGTAAAATTCAATCTTTG-----TTCTTCGAGAGATAAAGATATTTCTTTTCTCTT 341 *** * ** * ** *** ** * * * * * * ** * * * consensus_445#0 TTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTT-GAAAAAGTATGT 777 consensus_445#1 TTGATTGAAATA---------TTGTTTAAATTGGATAATTTAAATTTTGTACAGATACAT 392 *** ** **** ** *** ** ***** *** *** * * * ** * consensus_445#0 GATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTA---TTATTCTTTTATTTG 834 consensus_445#1 TCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTT 452 * ** ** ** *** *** *** * **** ** * *** ** *** * consensus_445#0 CATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATA 894 consensus_445#1 CATCAAC-CTTACACTTTGAA---CAATCTTATGATTCCATGA-GATAC--TTTCTTATG 505 **** ** *** * *** * * ** ** * **** ** ** ** * ** consensus_445#0 CGTAATAAAATGTATAAATTAAA 917 consensus_445#1 GATTCT----------------- 511 * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |