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Apis mellifera
cluster # 445 cluster # 445       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_445#0 length = 917 sequences # 3  
consensus_445#1 length = 511 sequences # 1  

consensusID : consensus_445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 917
fasta sequence
                              [TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGTATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACCAGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGCATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACGTGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAA]

[-] EMBL BI510300             [TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGTATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACCAGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGCATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCTGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL BI516955             [                                                                                                                                                                                                                                          GTCGGCAGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCGGCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACGTGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGAT                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI512548             [                                                                                                                                                                                                                                                                                                                                                                                                                      AGGACGGTTGCAACTCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTCCTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGCTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTGCTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAA]


>consensus_445#0 TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGT ATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACC AGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGC ATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGC AGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCG GCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACG TGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAAC TCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTC CTCCTTGTGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAGC TACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTTG CTGATTGGACGCTGACCAGTCGATAGTTGTCGAACAATCTTGATCTGTGAAATGAATATC TGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCTTT GGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTTGAAAAAGTATGTGAT GCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTATTATTCTTTTATTTGCATCGA CGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAAT AAAATGTATAAATTAAA



consensusID : consensus_445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence
                              [CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTCAATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTAAATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTATGATTCCATGAGATACTTTCTTATGGATTCT]

[+] EMBL BI512205             [CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAATTAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTCAATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTAAATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTATGATTCCATGAGATACTTTCTTATGGATTCT]


>consensus_445#1 CTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATACGTAATAAAATGTATAAAT TAAACGGAAAGTTTAATTGGTGATTCAAGTTTCTTAATTTCACTTTAGTTCACCAGCGAA ACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAATTCCGTT CTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGTTTCCCCTCTCTCGTTAAAT GTAAAACATTTAAGGAAATTAGGAACATCCGTGAGAGAGGTTAAGTTCTTGGTAAAATTC AATCTTTGTTCTTCGAGAGATAAAGATATTTCTTTTCTCTTTTGATTGAAATATTGTTTA AATTGGATAATTTAAATTTTGTACAGATACATTCTACTAACTTCTTTTATTCTTTTTTTC TTTTTATCTAAAGAAAACAATTTTTCTATGTTCATCAACCTTACACTTTGAACAATCTTA TGATTCCATGAGATACTTTCTTATGGATTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_445#0      TTTTTTTCGCGGGGATACCGTTGGTCCCGCCCCTCTGGGCGGCTCCTGGCACCCGGAAGT 60
consensus_445#1      ------------------------------------------------------------
                                                                                 

consensus_445#0      ATCTTCGGCCCGAATACTGACGGACCTGTCCTCCCAGTACGAGCTCCCATCGCCGCAACC 120
consensus_445#1      ------------------------------------------------------------
                                                                                 

consensus_445#0      AGGATGTTTTTGTCCTCGAGAGCTTTCCCGCCGATTCTCTTCGCGGCGCTCTTCCTCTGC 180
consensus_445#1      ------------------------------------------------------------
                                                                                 

consensus_445#0      ATCGGGCTGGCACACGGTATCAGATGTTACAAATGCGGACAATACAACGAGGGAGTCGGC 240
consensus_445#1      ------------------------------------------------------------
                                                                                 

consensus_445#0      AGCATCACGCCGTGCATCAATTACACCGCTCACATGCATCNGAAGGAATGTCCACCCTCG 300
consensus_445#1      ------------------------------------------------------------
                                                                                 

consensus_445#0      GCCGAATGGTGCATCAAATATGTCAGCGAAGGGTCGATAGTTCGAGACTGCGTGCCAACG 360
consensus_445#1      -----------------------------------------------CTTCTCCTTTTTC 13
                                                                    ** *         

consensus_445#0      TGTGTGGAAAAGGAGGCCTGGAGCACGATGACGTATTGTTGCCAGCAGGACGGTTGCAAC 420
consensus_445#1      TGGGTTAATGAAGAAACC---ATTCTTAATACGTAATAAAATGTATAAATTAAACGGAA- 69
                     ** **  *  * **  **   *     *  ***** *         *        * ** 

consensus_445#0      TCGGCCCCATCGGTTGTATCCAGCAACAGCCTCGCGATCGTCGCGATCACGATGGTGCTC 480
consensus_445#1      --AGTTTAATTGGTG--ATTCA-----AGTTTCTTAATT-------TCACTTTAGTTCAC 113
                        *    ** ***   ** **     **  **   **        ****  * ** * *

consensus_445#0      CTCCTTG-TGCTTCGTGGCTAATACGTCGTTTCCAGCGACCAGGTGACCGCGAATGGAAG 539
consensus_445#1      CAGCGAAACGCTCTCTCTGGAGAATTTTATTCGATTTAATTTAATTTTTGTGTAAAGAAA 173
                     *  *     ***   *    *  *  *  **       *     *    * * *  *** 

consensus_445#0      CTACGGGATCCCTTCGACATCACCGCGCTAACCATCGATTATTGTCCTGGCCTTTATCTT 599
consensus_445#1      TTCCG---TTCTATATACGTATACGAAAGTTCCTTAAGTTGTTTAATTCGT-TTCCCCTC 229
                      * **   * *  *  ** *   **      ** *   ** **    * *  **   ** 

consensus_445#0      GCTGATTGGACGCTGACCAGTCGAT-AGTTGTCGAACAATCTTGATCTGTGAAATGAATA 658
consensus_445#1      TCTCGTTAAATGTAAAACATTTAAGGAAATTAGGAACATCCGTGA---GAGAGGTTAAGT 286
                      **  **  * *   * ** *  *  *  *   *****  * ***   * **  * **  

consensus_445#0      TCTGTGAAATTTCCATCCTTCAATCGATTTTCTACGCGCTCCACCATTCTCATAGATTCT 718
consensus_445#1      TCTTGGTAAAATTCAATCTTTG-----TTCTTCGAGAGATAAAGATATTTCTTTTCTCTT 341
                     ***  * **  * **  ***       ** *    * * *  *    * ** *   *  *

consensus_445#0      TTGGTTTGAATAAATTCTTTTTTTTTTTGGTTTGATAAAGTAAGTTT-GAAAAAGTATGT 777
consensus_445#1      TTGATTGAAATA---------TTGTTTAAATTGGATAATTTAAATTTTGTACAGATACAT 392
                     *** **  ****         ** ***   ** *****  *** *** * * *  **  *

consensus_445#0      GATGCTCCATTTTTCTATATTTTCTTTTTATTTACCTTTCTA---TTATTCTTTTATTTG 834
consensus_445#1      TCTACTAACTTCTTTTATTCTTTTTTTCTTTTTATCTAAAGAAAACAATTTTTCTATGTT 452
                       * **   ** ** ***  *** *** * **** **    *     *** ** *** * 

consensus_445#0      CATCGACGTTTATATTTTTCTTCTCCTTTTTCTGGGTTAATGAAGAAACCATTCTTAATA 894
consensus_445#1      CATCAAC-CTTACACTTTGAA---CAATCTTATGATTCCATGA-GATAC--TTTCTTATG 505
                     **** **  *** * ***      *  * ** **  *  **** ** **  **  * ** 

consensus_445#0      CGTAATAAAATGTATAAATTAAA 917
consensus_445#1      GATTCT----------------- 511
                       *  *                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)