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Apis mellifera
cluster # 459 cluster # 459       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_459#0 length = 600 sequences # 3  
consensus_459#1 length = 445 sequences # 1  

consensusID : consensus_459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 600
fasta sequence
                              [CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGGGAAGTAACTAGATACATAGATGCACTTATCAAAGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATGTATCTCGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCATATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGGA]

[+] EMBL BI515550             [CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAAa                                                                                                                                                                                                                ]
[+] EMBL BI515559             [CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTNNCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATA                                                                                                                                                                                                                                           ]
[+] EMBL BI504075             [                                                      CGGATGCTGCTGCGGGTGCAGGTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAACGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGGTAAGTAACTAGATACATAGATGCACTTATCAAAGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATGTATCTCGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCATATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGGA]


>consensus_459#0 CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATG CTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGC CTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCG TCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGC TCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAA AACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCG GAATAATCGTATTGGCCATCATTGTTGGGAAGTAACTAGATACATAGATGCACTTATCAA AGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATGTATCT CGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCAT ATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGGA



consensusID : consensus_459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence
                              [GCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCNNNTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAACTTCATGTNGNCGCGCTGGTTGGTGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAGCGAGCGCCACCGGCAGCAACGACTCGCAAA]

[+] EMBL BI510968             [GCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCNNNTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAACTTCATGTNGNCGCGCTGGTTGGTGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAGCGAGCGCCACCGGCAGCAACGACTCGCAAA]


>consensus_459#1 GCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCC GACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAG GCGACGCAGGCGCNNNTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTG TTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGA GCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTG AAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAAC TTCATGTNGNCGCGCTGGTTGGTGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAGCGAGC GCCACCGGCAGCAACGACTCGCAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_459#0      CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATG 60
consensus_459#1      --------------------------------GCCACCGAAGGCGGTCTAGCACCGGATG 28
                                                     ****************************

consensus_459#0      CTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGC 120
consensus_459#1      CTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGC 88
                     *************   ** *****************************************

consensus_459#0      CTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCG 180
consensus_459#1      CTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCNNNTGGACGAGGTCG 148
                     *********************************************   ************

consensus_459#0      TCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGC 240
consensus_459#1      TCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGC 208
                     ************************************************************

consensus_459#0      TCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAA 300
consensus_459#1      TCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAA 268
                     ************************************************************

consensus_459#0      AACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCG 360
consensus_459#1      AACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCG 328
                     ************************************************************

consensus_459#0      GAATAATCGTATTGGCCATCATTGTTGGGAAGTAACTAGATACATAGATGCACTTATCAA 420
consensus_459#1      GAATAATCGTATTGGCCATCATTGTTGCGAACTT------CATGTNGNCGCGCTGGTTGG 382
                     *************************** *** *        *  * *  ** **  *   

consensus_459#0      AGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATG-TATC 479
consensus_459#1      TGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAG----CGAGCGCCACCGGCAGCAACGAC 438
                      *  ** *    **    **     **** **      * * *  **   **       *

consensus_459#0      TCGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCA 539
consensus_459#1      TCGCAAA----------------------------------------------------- 445
                     **** *                                                      

consensus_459#0      TATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGG 599
consensus_459#1      ------------------------------------------------------------
                                                                                 

consensus_459#0      A 600
consensus_459#1      -
                      




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)