These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 600 fasta sequence [CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGGGAAGTAACTAGATACATAGATGCACTTATCAAAGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATGTATCTCGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCATATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGGA] [+] EMBL BI515550 [CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAAa ] [+] EMBL BI515559 [CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTNNCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATA ] [+] EMBL BI504075 [ CGGATGCTGCTGCGGGTGCAGGTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAACGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGGTAAGTAACTAGATACATAGATGCACTTATCAAAGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATGTATCTCGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCATATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGGA] consensusID : consensus_459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [GCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCNNNTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAACTTCATGTNGNCGCGCTGGTTGGTGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAGCGAGCGCCACCGGCAGCAACGACTCGCAAA] [+] EMBL BI510968 [GCCACCGAAGGCGGTCTAGCACCGGATGCTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGCCTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCNNNTGGACGAGGTCGTCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGCTCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAAAACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCGGAATAATCGTATTGGCCATCATTGTTGCGAACTTCATGTNGNCGCGCTGGTTGGTGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAGCGAGCGCCACCGGCAGCAACGACTCGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_459#0 CAGGAAACCAACAGCGACCGACGAACAACATGGCCACCGAAGGCGGTCTAGCACCGGATG 60 consensus_459#1 --------------------------------GCCACCGAAGGCGGTCTAGCACCGGATG 28 **************************** consensus_459#0 CTGCTGCGGGTGCAGGTGGGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGC 120 consensus_459#1 CTGCTGCGGGTGCNNNTGCGGGTGCAGGTTCCGACGGTATCGTCGGAGGTCCGAGAACGC 88 ************* ** ***************************************** consensus_459#0 CTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCAGGTGGACGAGGTCG 180 consensus_459#1 CTCAGCAGATCGCCTCGCAGAAACGGCTGCAGGCGACGCAGGCGCNNNTGGACGAGGTCG 148 ********************************************* ************ consensus_459#0 TCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGC 240 consensus_459#1 TCGACATTATGAAAACGAACGTTGAAAAGGTGTTGGAGCGTGATCAAAAGTTGTCCGAGC 208 ************************************************************ consensus_459#0 TCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAA 300 consensus_459#1 TCGATGATCGAGCAGACGCGCTTCAGCAAGGAGCGTCGCAATTTGAACAACAAGCAGGAA 268 ************************************************************ consensus_459#0 AACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCG 360 consensus_459#1 AACTGAAGAGGAAGTTCTGGTTACAAAATCTGAAGATGATGATCATCATGGGCGTCATCG 328 ************************************************************ consensus_459#0 GAATAATCGTATTGGCCATCATTGTTGGGAAGTAACTAGATACATAGATGCACTTATCAA 420 consensus_459#1 GAATAATCGTATTGGCCATCATTGTTGCGAACTT------CATGTNGNCGCGCTGGTTGG 382 *************************** *** * * * * ** ** * consensus_459#0 AGCTAATAACACTGCCATTGTAACTGTCTAAATGTTTTGTGTGATACGATCAATG-TATC 479 consensus_459#1 TGGAAAAAGATTTGTGTGTGAGTGNGTCTGAAG----CGAGCGCCACCGGCAGCAACGAC 438 * ** * ** ** **** ** * * * ** ** * consensus_459#0 TCGCCACGATATAGAACGACTAATTCGGGATTAATTGAAATATCCTATCATATCCAATCA 539 consensus_459#1 TCGCAAA----------------------------------------------------- 445 **** * consensus_459#0 TATCGTGATTATATACTGCAAGTTTTGTCGAGTTGAATTGAAACCCAGGAATCGAACCGG 599 consensus_459#1 ------------------------------------------------------------ consensus_459#0 A 600 consensus_459#1 - |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |