These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 601 fasta sequence [TTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCAAAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAATAGAGATTTTTGTTCAGCTGTTTTGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTATTAGTACTTTCATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAG] [+] EMBL BI517015 [TTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCAAAAATTT ] [+] EMBL BI509877 [ GTTCAAATTTAAAAGAATTAAA AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGAAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAATAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATTCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCAAAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAATAGAGATTTTTGTTCAGCTGTTTTGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTATTAGTACTTTCATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAG] consensusID : consensus_466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGATTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCT] [+] EMBL BI509723 [ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGCGTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGATTGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAATACGTGTGTAATTTTTCTAGAATAACAAAGGCCTAACTCCACTTTCTGTCCTCTTAACAGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCATCATCTTTTTTTTTATAAATAATTTTCATTCAATTGATAGTTAAAATTAGAAATTTATTTCACATCCCCTTCGATCCT] consensusID : consensus_466#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTAAGAGTTAATTAATCGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGAAAGGATCCTCATTAACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTTTAGAAACCTAGTCGTTGTT] [+] EMBL BI504016 [CATTAAATAATATTCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTAAGAGTTAATTAATCGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGAAAGGATCCTCATTAACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTTTAGAAACCTAGTCGTTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_466#0 ------------------------------TTAATTAAACATTACCGAAAAACCCGCTGC 30 consensus_466#1 ATTGTAAGAGGTTCAGGGGAGGCGGAGATATTAATTAAACATTACCGAAAAACCCGCTGC 60 consensus_466#2 ------------------------------------------------------------ consensus_466#0 GTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 90 consensus_466#1 GTTCAAATTTAAAAGAATTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--------- 111 consensus_466#2 ------------------------------------------------------------ consensus_466#0 AGAGAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTT--- 147 consensus_466#1 ---GAGAGATACCAAATATGTTAAACTCACATCCGTGCGCGAATTTTGTGCGAATTTGAT 168 consensus_466#2 ------------------------------------------------------------ consensus_466#0 TGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAAT 207 consensus_466#1 TGCGATGCGTTTTGTTGATGATGAATGAGTGAAAGAGCGCGAGGAGTGAGTGGAAAAAAT 228 consensus_466#2 -----------------------------------------------CATTAAATAATAT 13 * * * ** ** consensus_466#0 ACGTGTGTAATTTTTCTAGAATAAC--AAAGGCCTAACTCCACTTTCTGTCCTC-TTAAC 264 consensus_466#1 ACGTGTGTAATTTTTCTAGAATAAC--AAAGGCCTAACTCCACTTTCTGTCCTC-TTAAC 285 consensus_466#2 TCTATCATTTCTTATACGATATAAGCAAAAGATTGAAGTGGACGTTAAGAGTTAATTAAT 73 * * ** * **** **** ** * ** ** * * **** consensus_466#0 AGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCAT 324 consensus_466#1 AGTCCACTGATACTCGCGTTCATTACACACGTCTAACTTAATCGTATCTTTCTACTTCAT 345 consensus_466#2 CGTCCTTTGCCATCGATCCTTTGCTCAAAGGGACGAGTAAGTGGAGAAAGGATCCTCATT 133 **** ** * * ** * * * * * * * * ** * consensus_466#0 CATCTTTTTTTTTATAAATAATT-TTCATTCAATTGATAGTTAAAATTAGAAATTTATTT 383 consensus_466#1 CATCTTTTTTTTTATAAATAATT-TTCATTCAATTGATAGTTAAAATTAGAAATTTATTT 404 consensus_466#2 AACCGCGTACGAGGTGGATCCTTGTTGACCTAATTAATATTT-----TAGAAACCTAGTC 188 * * * * ** ** ** * **** *** ** ****** ** * consensus_466#0 CACATCCCCTTCGATCCTTACGTTTACGTTAAATTAAGAAAAAAATAGTTTTCTCCCTCA 443 consensus_466#1 CACATCCCCTTCGATCCT------------------------------------------ 422 consensus_466#2 GTTGTT------------------------------------------------------ 194 * consensus_466#0 AAAATTTTAAGTAATTTCAATTGCAATTGTTTTAAAATAGAGATTTTTGTTCAGCTGTTT 503 consensus_466#1 ------------------------------------------------------------ consensus_466#2 ------------------------------------------------------------ consensus_466#0 TGAAAATTTCGATCGAGTTGAAACTTTTTTGCAATTATTAGTACTTTCATTAAATAATAT 563 consensus_466#1 ------------------------------------------------------------ consensus_466#2 ------------------------------------------------------------ consensus_466#0 TCTATCATTTCTTATACGATATAAGCAAAAGATTGAAG 601 consensus_466#1 -------------------------------------- consensus_466#2 -------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |