Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 490 cluster # 490       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_490#0 length = 878 sequences # 3  
consensus_490#1 length = 519 sequences # 1  

consensusID : consensus_490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 878
fasta sequence
                              [GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGACGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTGACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTTCGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCTACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGACGCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAATGACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAACAAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT]

[+] EMBL BI516353             [GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGACGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTGACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTTCGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCTACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGNGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAG                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI503896             [                                                                                                                                                                                                                                                               TGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCTACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGG                                                                                                                                                                                                                                    ]
[+] EMBL BI507828             [                                                                                                                                                                                                                                                                                                             CGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGACGCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAATGACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAACAAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT]


>consensus_490#0 GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGA AAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGA CGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTG ACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTT CGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCT ACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCC CGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATA CAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGAT AATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTC GAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAAG GAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATT CGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGAC GCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAATG ACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAAC AAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT



consensusID : consensus_490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence
                              [CCCGTGAAATCGCAATCGTTCTCGTACGCGGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCGTAAGCAAGGTTCGGGACGACGAATGCCGGTGAATTCGGATACGCGACCGATTCGTACCTCCGGGGACCGACAAGTAACGAGCGAACGACCTAGGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA]

[+] EMBL BI510331             [CCCGTGAAATCGCAATCGTTCTCGTACGCGGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCGTAAGCAAGGTTCGGGACGACGAATGCCGGTGAATTCGGATACGCGACCGATTCGTACCTCCGGGGACCGACAAGTAACGAGCGAACGACCTAGGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA]


>consensus_490#1 CCCGTGAAATCGCAATCGTTCTCGTACGCGGACAATTCTCCATCGCGGCGAACTTGTTGT GCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCGTAAGCA AGGTTCGGGACGACGAATGCCGGTGAATTCGGATACGCGACCGATTCGTACCTCCGGGGA CCGACAAGTAACGAGCGAACGACCTAGGGCTCGACTCATGATGCAATATCCAAACATCGA TATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGA CGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTT TTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGA GAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGA AATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_490#0      GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGA 60
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      AAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGA 120
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      CGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTG 180
consensus_490#1      -----CCCGTGAAATCG-CAATCGTTCTCGTAC----GCGGACAATTCTCCATCG----- 45
                           *  ** ***   * ****   *  **     ** ***** * * *         

consensus_490#0      ACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTT 240
consensus_490#1      -CGGCGAACTTGTTG----TGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAA---TT 97
                      **** **   ** *     ***   ***     **   * *      **   **   **

consensus_490#0      CGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAAC-GTTGTGCTCCGC 299
consensus_490#1      CGGAACAATTCTCCGCGT----AAGCAAGGTTCGGGACGACGAATGCCGGTGAATTCGGA 153
                     **   *   * **   **    **     ** ******     *  * * **   ** * 

consensus_490#0      TACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCC 359
consensus_490#1      TACGCG--ACCGATTCGTACCT-----CCGGGGACCGACAAGTAACGAGCGAACGA---- 202
                     **** *     **   ** ***     * * *     * ** **    *****  *    

consensus_490#0      CCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATAT 419
consensus_490#1      ----------CCTA---------GGGCTCGACTCATGATGCAATATCCAAACATCGATAT 243
                                **           ************************************

consensus_490#0      ACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGA 479
consensus_490#1      ACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGA 303
                     ************************************************************

consensus_490#0      TAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTT 539
consensus_490#1      TAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTT 363
                     ************************************************************

consensus_490#0      CGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAA 599
consensus_490#1      CGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAA 423
                     *************************************** ********************

consensus_490#0      GGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAAT 659
consensus_490#1      GGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAAT 483
                     ************************************************************

consensus_490#0      TCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGA 719
consensus_490#1      TCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA------------------------ 519
                     ************************************                        

consensus_490#0      CGCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAAT 779
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      GACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAA 839
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      CAAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT 878
consensus_490#1      ---------------------------------------
                                                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)