These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 878 fasta sequence [GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGACGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTGACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTTCGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCTACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGACGCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAATGACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAACAAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT] [+] EMBL BI516353 [GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGACGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTGACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTTCGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCTACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGNGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAG ] [+] EMBL BI503896 [ TGTTGCGAAAATGAGTCCGGGACCGTCGAAACGTTGTGCTCCGCTACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGG ] [+] EMBL BI507828 [ CGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCCCCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGACGCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAATGACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAACAAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT] consensusID : consensus_490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CCCGTGAAATCGCAATCGTTCTCGTACGCGGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCGTAAGCAAGGTTCGGGACGACGAATGCCGGTGAATTCGGATACGCGACCGATTCGTACCTCCGGGGACCGACAAGTAACGAGCGAACGACCTAGGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA] [+] EMBL BI510331 [CCCGTGAAATCGCAATCGTTCTCGTACGCGGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAATTCGGAACAATTCTCCGCGTAAGCAAGGTTCGGGACGACGAATGCCGGTGAATTCGGATACGCGACCGATTCGTACCTCCGGGGACCGACAAGTAACGAGCGAACGACCTAGGGCTCGACTCATGATGCAATATCCAAACATCGATATACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGATAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTTCGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAAGGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAATTCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_490#0 GGACAATTCTCCATCGCGGCGAACTTGTTGTGCCGGTGTTAAAAGTTAAAAACTTTTCGA 60 consensus_490#1 ------------------------------------------------------------ consensus_490#0 AAACAATTCGGAACAATTCTCCGCTCAAGCGCGTAAGCAAGCACCAGTCCACACCCCCGA 120 consensus_490#1 ------------------------------------------------------------ consensus_490#0 CGAAAACGATGGAATTATCGATCGCGTTGCTATTCGAGCCGACAACTTTTCGCTAGGCTG 180 consensus_490#1 -----CCCGTGAAATCG-CAATCGTTCTCGTAC----GCGGACAATTCTCCATCG----- 45 * ** *** * **** * ** ** ***** * * * consensus_490#0 ACGGCAAAACCGTGGGGGACGCCACCGTTCCTCTTTTCTACCGGAGGAAAGGAAAACGTT 240 consensus_490#1 -CGGCGAACTTGTTG----TGCCGGTGTTAAAAGTTAAAAACTTTTCGAAAACAA---TT 97 **** ** ** * *** *** ** * * ** ** ** consensus_490#0 CGCGTCTCGTTTCGATGTTGCGAAAATGAGTCCGGGACCGTCGAAAC-GTTGTGCTCCGC 299 consensus_490#1 CGGAACAATTCTCCGCGT----AAGCAAGGTTCGGGACGACGAATGCCGGTGAATTCGGA 153 ** * * ** ** ** ** ****** * * * ** ** * consensus_490#0 TACGTGTCGTTGAACTGTGCCTGTGATCTGTGCGATAAAAAATATTTCGCGAATTAATCC 359 consensus_490#1 TACGCG--ACCGATTCGTACCT-----CCGGGGACCGACAAGTAACGAGCGAACGA---- 202 **** * ** ** *** * * * * ** ** ***** * consensus_490#0 CCGCCGATTCTCTGCCACACGACAGGCTCGACTCATGATGCAATATCCAAACATCGATAT 419 consensus_490#1 ----------CCTA---------GGGCTCGACTCATGATGCAATATCCAAACATCGATAT 243 ** ************************************ consensus_490#0 ACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGA 479 consensus_490#1 ACAAGAGGGGAGAAGGATTCGTAGCGTGCGAAGAAGACTTTTTCAAGACGACGATGACGA 303 ************************************************************ consensus_490#0 TAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTT 539 consensus_490#1 TAATGAAACGGAATCGGGGCGAAATTCCCGTATCGAGGACAATGTTGCCAATTGTTTTTT 363 ************************************************************ consensus_490#0 CGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGGTGGAACTTCGACTTCGAGAA 599 consensus_490#1 CGAAGAGGCTCGAAAATACCGAGAGAACGCTAAGGAGAGATGGAACTTCGACTTCGAGAA 423 *************************************** ******************** consensus_490#0 GGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAAT 659 consensus_490#1 GGAGGAACCTCTACCCGGTCGTTACGTATGGGTGAAGCTTGATCAACACGGAAATGAAAT 483 ************************************************************ consensus_490#0 TCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAATATACAAACGATGCAGGAAGAAGA 719 consensus_490#1 TCGTAATCCGCTGGAGGCGAACAGCCGAGTAGAAAA------------------------ 519 ************************************ consensus_490#0 CGCACAAGACGATGACGTTACGATGCAAGATCATGCGGAGGATAAGGATGACGATAAAAT 779 consensus_490#1 ------------------------------------------------------------ consensus_490#0 GACTGATAGTACGTGAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACAATAA 839 consensus_490#1 ------------------------------------------------------------ consensus_490#0 CAAAATAAAACGTAGTAACAAAAATAAAAATTTGCTCAT 878 consensus_490#1 --------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |