These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence [TCGAAGATGCGAAATTATATATATTCACGGCATTCTCATGGTCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAGGTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACTAATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGTAGTTCTGGACCTTTGAAATAACGCGAGGCTACTCGTACATTATATTCTTGACCAGGGTGGTAAAATTCTGCTAGACCCCAATCGATTAACCGTAACTTTCGATTTTCATGGTCTATCATAACGTTGTGCGGTTTAACGTCCCTATGCATTATTCCCATACTATGGCAATAATCTAATGCTTTTAATAATTCGTAGAGGTAGTATCTTATGTCGTAGTCTGTTAGCGTCTGGTATAATTGCTT] [+] EMBL BI510400 [TCGAAGATGCGAAATTATATATATTCACGGCATTCTCATGGTCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAGGTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACTAATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGA ] [+] EMBL BI509541 [ ATGGTCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAGGTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACTAATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGTAGTT ] [-] EMBL BI505094 [ GTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCAAGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGTAGTTCTGGACCTTTGAAATAACGCGAGGCTACTCGTACATTATATTCTTGACCAGGGTGGTAAAATTCTGCTAGACCCCAATCGATTAACCGTAACTTTCGATTTTCATGGTCTATCATAACGTTGTGCGGTTTAACGTCCCTATGCATTATTCCCATACTATGGCAATAATCTAATGCTTTTAATAATTCGTAGAGGTAGTATCTTATGTCGTAGTCTGTTAGCGTCTGGTATAATTGCTT] consensusID : consensus_513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [GAATACTTCATCGTTTTCTGAGTCCCATTTCCAACTTGTCCCACCATATTTTTCAGTCGGTTTATTCCACGNNCCGGTACGCTGCTCACAGTCACGCTTAGGGATGGGATTAAGCCCCTCGCGCGAAGTATCGATACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCAC] [-] EMBL BI503558 [GAATACTTCATCGTTTTCTGAGTCCCATTTCCAACTTGTCCCACCATATTTTTCAGTCGGTTTATTCCACGNNCCGGTACGCTGCTCACAGTCACGCTTAGGGATGGGATTAAGCCCCTCGCGCGAAGTATCGATACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGAGTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAGGGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTATCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGTTCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATATGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_513#0 ----------------TCGAAGATGCGAAATTATATATATTCACGGCATTCTCA---TGG 41 consensus_513#1 GAATACTTCATCGTTTTCTGAGTCCCATTTCCAACTTGTCCCACCATATTTTTCAGTCGG 60 ** ** * * * *** *** * ** consensus_513#0 TCGATTCAACAATACGTGAATGATATGGTTAAATAATTATAAATTGGAAATTGAG----- 96 consensus_513#1 TTTATTCCACGNNCCG-GTACGCTGCTCACAGTCACGCTTAGGGATGGGATTAAGCCCCT 119 * **** ** ** * * * * * * ** * *** ** consensus_513#0 -----GTGGTGACATTACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGA 151 consensus_513#1 CGCGCGAAGTATCGATACCTGGGCCGTTACTCACCTACAGGCAACGAACCTGTTATGGGA 179 * ** * ********************************************* consensus_513#0 GTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAG 211 consensus_513#1 GTAGGTGACGATGATACCATGTTCAATCGACCCTGATCTTTTACTATTGGATAAAAATAG 239 ************************************************************ consensus_513#0 GGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTA 271 consensus_513#1 GGATGTTCCATAGCTTCACGTGCAGTGAGTCTTTCATAATGATCATAACGCAAAAGTTTA 299 ************************************************************ consensus_513#0 TCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGT 331 consensus_513#1 TCAAGAAAATCAAGACTTTCGTGTGATACCAAATGTTGATTCTCTGAATGCATAAAACGT 359 ************************************************************ consensus_513#0 TCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATA 391 consensus_513#1 TCCCAGCGTTTACGTGAATGTCGGCCTAAAATATCATTGAAGCGAGGATCCAATTCAATA 419 ************************************************************ consensus_513#0 TGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCACT 451 consensus_513#1 TGATATTTTTCAAGATATTCAAATAATTCTTCAGTTCCAAGAACTTTTGCAATTCTCAC- 478 *********************************************************** consensus_513#0 AATTGGTCGTAATTATCGTGTCCATGAAAAAACGGTTCTTTCCTGAATATCATACTTGCA 511 consensus_513#1 ------------------------------------------------------------ consensus_513#0 AGCATACATCCAAGAGACCACATATCTAATGAATAATCATACATCTGATAATCTACAAGT 571 consensus_513#1 ------------------------------------------------------------ consensus_513#0 AGTTCTGGACCTTTGAAATAACGCGAGGCTACTCGTACATTATATTCTTGACCAGGGTGG 631 consensus_513#1 ------------------------------------------------------------ consensus_513#0 TAAAATTCTGCTAGACCCCAATCGATTAACCGTAACTTTCGATTTTCATGGTCTATCATA 691 consensus_513#1 ------------------------------------------------------------ consensus_513#0 ACGTTGTGCGGTTTAACGTCCCTATGCATTATTCCCATACTATGGCAATAATCTAATGCT 751 consensus_513#1 ------------------------------------------------------------ consensus_513#0 TTTAATAATTCGTAGAGGTAGTATCTTATGTCGTAGTCTGTTAGCGTCTGGTATAATTGC 811 consensus_513#1 ------------------------------------------------------------ consensus_513#0 TT 813 consensus_513#1 -- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |