These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 634 fasta sequence [TTTTTTTTTTTTACCACGGTACGTCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTACGAAAGTGTCAGTTGTCNNNNCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTGAAGAATATCTTCGATTGCTTAGAGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATTGCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATC] [+] EMBL BI509993 [TTTTTTTTTTTTACCACGGTACGTCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTACGAAAGTGTCAGTTGTCTATTCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAAAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTNAAGAATATCTTCGATTGCTTAGNGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTNAAGGGAGTTTATATAAAT ] [+] EMBL BI503539 [ TCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTACGAAAGTGTCAGTTGTCNNNNCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTGAAGAATATCTTCGATTGCTTAGAGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATTGCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAAT ] [+] EMBL BI509138 [ AGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCTGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTGAAGAATATCTTCGATTGCTTAGAGAAGCGCAAAGAGATTCTTTGCCCTCATCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATTGCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATC] consensusID : consensus_515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CTCACGACGAGTTGGATAGGTCGTGTAATGGAAAACCAGCCATTCTTTTCGCGCTGTTCGTGTAAAAAACGGCCGTCTGGTAAATTGATCCGCGACTCCAATTGACGTAGGAATAACGTGTATNNNCAATTTCACTCGACGATACAGTATCCATGCGCACCGCAATTTAAACATTTTTAAATCGGATTAAATCGGATTAAATCGTGGTCAAGACGATGCTTTTTTTCATAAGAGCATTTTTTTTTCATCTTCTTCTTTTTTCTCAAAAAGGATTAAACAAATTCCTTAACATTGTTGTTGTTGTTTCTTTTTTTACATCCGCAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATCCGTTTTGGTTGGAGCTGGCTTGGGGGTTTGGTTGTCCAGGCGGGGATCGATAACGACCAGCGTGACCATCGAG] [+] EMBL BI505048 [CTCACGACGAGTTGGATAGGTCGTGTAATGGAAAACCAGCCATTCTTTTCGCGCTGTTCGTGTAAAAAACGGCCGTCTGGTAAATTGATCCGCGACTCCAATTGACGTAGGAATAACGTGTATNNNCAATTTCACTCGACGATACAGTATCCATGCGCACCGCAATTTAAACATTTTTAAATCGGATTAAATCGGATTAAATCGTGGTCAAGACGATGCTTTTTTTCATAAGAGCATTTTTTTTTCATCTTCTTCTTTTTTCTCAAAAAGGATTAAACAAATTCCTTAACATTGTTGTTGTTGTTTCTTTTTTTACATCCGCAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATCCGTTTTGGTTGGAGCTGGCTTGGGGGTTTGGTTGTCCAGGCGGGGATCGATAACGACCAGCGTGACCATCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_515#0 TTTTTTTTTTTTACCACGGTACGTCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTA 60 consensus_515#1 --------------------------------------------------------CTCA 4 * * consensus_515#0 CGAAAGTGTCAGTTGTCNNNNCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTG 120 consensus_515#1 CGACGAGTTGGATAGGTCGTGTAATGGAAAACCAGCCATTC-TTTTCGCGCTGTT---CG 60 *** * * * *** * *** *** * ** * consensus_515#0 TGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGT--GAATC 178 consensus_515#1 TGTAAAAAACGGCCGT-----CTGGTAAATTGATCCGCGACTCCAATTGACGTAGGAATA 115 *** * * * * *** ***** * ** * ** ** **** consensus_515#0 TTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGG 238 consensus_515#1 ACGTGTATNNNCAATTTCACTCGACGATACAGTATCCATGCGCACCGCAATTTAAACATT 175 * ** * * ** * *** * ** * * * * * * consensus_515#0 TGAAGAATATCTTCGATTGC-TTAGAGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTA 297 consensus_515#1 TTTAAATCGGATTAAATCGGATTAAATCGTGGTCAAGACGATGCTTTTTTTCATAAG--A 233 * * * ** ** * *** * * **** * ** ** * * * consensus_515#0 GGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTA 357 consensus_515#1 GCATTTTTTTTTCATCTTCTTCTTTTTTCTCAAAAAGGATTA-----AACAAATTCCTTA 288 * ** *** ******* * * ** **** ** ** * * ** consensus_515#0 ACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATT 417 consensus_515#1 ACATT-----------GTTGTTG-----------------------TTGTTTCTTTTTTT 314 *** * * * ** * * ** ** consensus_515#0 GCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTT 477 consensus_515#1 ACATCCGCA-GGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTT 373 * * ** ************************************************** consensus_515#0 CGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATA 537 consensus_515#1 CGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATA 433 ************************************************************ consensus_515#0 AAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAG 597 consensus_515#1 AAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAG 493 ************************************************************ consensus_515#0 AGGTCCTTTATACTCTTGTTATCACGAATATTCTATC----------------------- 634 consensus_515#1 AGGTCCTTTATACTCTTGTTATCACGAATATTCTATCCGTTTTGGTTGGAGCTGGCTTGG 553 ************************************* consensus_515#0 -------------------------------------------------- consensus_515#1 GGGTTTGGTTGTCCAGGCGGGGATCGATAACGACCAGCGTGACCATCGAG 603 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |