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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 634 fasta sequence
[TTTTTTTTTTTTACCACGGTACGTCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTACGAAAGTGTCAGTTGTCNNNNCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTGAAGAATATCTTCGATTGCTTAGAGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATTGCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATC]
[+] EMBL BI509993 [TTTTTTTTTTTTACCACGGTACGTCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTACGAAAGTGTCAGTTGTCTATTCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAAAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTNAAGAATATCTTCGATTGCTTAGNGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTNAAGGGAGTTTATATAAAT ]
[+] EMBL BI503539 [ TCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTACGAAAGTGTCAGTTGTCNNNNCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTGAAGAATATCTTCGATTGCTTAGAGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATTGCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAAT ]
[+] EMBL BI509138 [ AGCTTTTAAGTGATTAAGTGTGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGTGAATCTTGGGTGGAATTGAATCCAGTTCCTGACAGGATAACACCGTTACCGTTTAGTAGCGGAGGTGAAGAATATCTTCGATTGCTTAGAGAAGCGCAAAGAGATTCTTTGCCCTCATCCGCTAGGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTAACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATTGCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATC]
consensusID : consensus_515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CTCACGACGAGTTGGATAGGTCGTGTAATGGAAAACCAGCCATTCTTTTCGCGCTGTTCGTGTAAAAAACGGCCGTCTGGTAAATTGATCCGCGACTCCAATTGACGTAGGAATAACGTGTATNNNCAATTTCACTCGACGATACAGTATCCATGCGCACCGCAATTTAAACATTTTTAAATCGGATTAAATCGGATTAAATCGTGGTCAAGACGATGCTTTTTTTCATAAGAGCATTTTTTTTTCATCTTCTTCTTTTTTCTCAAAAAGGATTAAACAAATTCCTTAACATTGTTGTTGTTGTTTCTTTTTTTACATCCGCAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATCCGTTTTGGTTGGAGCTGGCTTGGGGGTTTGGTTGTCCAGGCGGGGATCGATAACGACCAGCGTGACCATCGAG]
[+] EMBL BI505048 [CTCACGACGAGTTGGATAGGTCGTGTAATGGAAAACCAGCCATTCTTTTCGCGCTGTTCGTGTAAAAAACGGCCGTCTGGTAAATTGATCCGCGACTCCAATTGACGTAGGAATAACGTGTATNNNCAATTTCACTCGACGATACAGTATCCATGCGCACCGCAATTTAAACATTTTTAAATCGGATTAAATCGGATTAAATCGTGGTCAAGACGATGCTTTTTTTCATAAGAGCATTTTTTTTTCATCTTCTTCTTTTTTCTCAAAAAGGATTAAACAAATTCCTTAACATTGTTGTTGTTGTTTCTTTTTTTACATCCGCAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTTCGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATAAAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAGAGGTCCTTTATACTCTTGTTATCACGAATATTCTATCCGTTTTGGTTGGAGCTGGCTTGGGGGTTTGGTTGTCCAGGCGGGGATCGATAACGACCAGCGTGACCATCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_515#0 TTTTTTTTTTTTACCACGGTACGTCGTTGCGAATGCGTCGTTTCTTCATAACGTATTTTA 60
consensus_515#1 --------------------------------------------------------CTCA 4
* *
consensus_515#0 CGAAAGTGTCAGTTGTCNNNNCAATCGTGTGTGCATTATTAGCTTTTAAGTGATTAAGTG 120
consensus_515#1 CGACGAGTTGGATAGGTCGTGTAATGGAAAACCAGCCATTC-TTTTCGCGCTGTT---CG 60
*** * * * *** * *** *** * ** *
consensus_515#0 TGTGGATTATGATGGCATCCACTGTAAAATTCACTTCGGATGAGAGTTTGGGT--GAATC 178
consensus_515#1 TGTAAAAAACGGCCGT-----CTGGTAAATTGATCCGCGACTCCAATTGACGTAGGAATA 115
*** * * * * *** ***** * ** * ** ** ****
consensus_515#0 TTGGGTGGAATTGAATCCAGTTCCCGACAGGATAACACCGTTACCGTTTAGTAGCGGAGG 238
consensus_515#1 ACGTGTATNNNCAATTTCACTCGACGATACAGTATCCATGCGCACCGCAATTTAAACATT 175
* ** * * ** * *** * ** * * * * * *
consensus_515#0 TGAAGAATATCTTCGATTGC-TTAGAGAAGCGCAAAGAGATTCTTTGCCCTCGTCCGCTA 297
consensus_515#1 TTTAAATCGGATTAAATCGGATTAAATCGTGGTCAAGACGATGCTTTTTTTCATAAG--A 233
* * * ** ** * *** * * **** * ** ** * * *
consensus_515#0 GGCATTCTTTGGCATCTTCCCGTCGAGGCACACCAAGGGATAGCCCGAAGAGTCCACCTA 357
consensus_515#1 GCATTTTTTTTTCATCTTCTTCTTTTTTCTCAAAAAGGATTA-----AACAAATTCCTTA 288
* ** *** ******* * * ** **** ** ** * * **
consensus_515#0 ACAGTCCAAACACGGAACTATCAACCGAGGATGAACTCAAGGGAGTTTATATAAATTATT 417
consensus_515#1 ACATT-----------GTTGTTG-----------------------TTGTTTCTTTTTTT 314
*** * * * ** * * ** **
consensus_515#0 GCTGCAACAAGGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTT 477
consensus_515#1 ACATCCGCA-GGAATCCGAATTTCTGGAGAAGAACACCGATTGGATCTATGAATGGAGTT 373
* * ** **************************************************
consensus_515#0 CGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATA 537
consensus_515#1 CGCGTCCAGATCAAGCACCACCTAAAGACTGGAAATTCAAGCATCCTCAGGGAATGAATA 433
************************************************************
consensus_515#0 AAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAG 597
consensus_515#1 AAAGAAAATCTTATAGCATTCGTACAACGAAAGTGGGAAAAATTGGATTGTTCTCAAAAG 493
************************************************************
consensus_515#0 AGGTCCTTTATACTCTTGTTATCACGAATATTCTATC----------------------- 634
consensus_515#1 AGGTCCTTTATACTCTTGTTATCACGAATATTCTATCCGTTTTGGTTGGAGCTGGCTTGG 553
*************************************
consensus_515#0 --------------------------------------------------
consensus_515#1 GGGTTTGGTTGTCCAGGCGGGGATCGATAACGACCAGCGTGACCATCGAG 603
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |