These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TGTTATTAGAAAAATCGATCATTCCCAATCGATCCATTCACAACGAAATCGAACCAAAATGGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGTCGTNCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGA] [+] EMBL BI506538 [TGTTATTAGAAAAATCGATCATTCCCAATCGATCCATTCACAACGAAATCGAACCAAAATGGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGTCGTNCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGA] consensusID : consensus_524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence [GATAGCTCCGTGTGTGTGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAACCAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAAATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAAAAGCCCAAAAAATGCTTTGCCGTCGTGCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGATG] [+] EMBL BI514309 [GATAGCTCCGTGTGTGTGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAACCAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAGGTATAAATATAACGAGAGAGGGGGGGTGGGGATGATGCATTGGCCCATTTGTTTCTATAAAAAATCGCTCCCGAGTTAAATGCTGGATCGAACGATCGATCGATCGATCCGTGGTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAAAAGCCCAAAAAATGCTTTGCCGTCGTGCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTATAATATAATACATGTTACAATAAGATATTATTAGATG] [+] EMBL BI505511 [ TGTTATTAGAAAAATCGATCATTCCTGTCACAACGAAATCGAACCAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTGAGAGATAGAGAAG ] consensusID : consensus_524#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGACGACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTTTACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGCCAGCGAAGCGTTGCAACGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAA] [+] EMBL BI506367 [AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGACGACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTTTACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGCCAGCGAAGCGTTGCAACGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAGAAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAGAAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_524#0 ------------------------------------------------------------ consensus_524#1 ------------------------------------------------------------ consensus_524#2 AGACAAATCGTGATCAATCGTATTATTAATTCGAGCAATTTCTGCCGATGCTCTCAAGAC 60 consensus_524#0 ------------------------------------------------------------ consensus_524#1 ---------------------------------------------------------GAT 3 consensus_524#2 GACGTATCGGTGCCAGGGCAAAAGGGAGAGAAAAAAAAAAATCAAACAATGGTTCCTCTT 120 consensus_524#0 -------------TGTTATTAGAAAAATCGA--TCATTCCCAATCGATCCATTCACAACG 45 consensus_524#1 AGCTCCGTGTGTGTGTTATTAGAAAAATCGA--TCATTCCTG----------TCACAACG 51 consensus_524#2 TACCTTATGATGGCTCCTCTCGAGAGCTCGGCTTCGTTCCGTGC--------CAGCGAAG 172 * ** * *** ** **** * * * consensus_524#0 AAATCGAAC-CAAAATGGAGAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAG 104 consensus_524#1 AAATCGAAC-CAAAATGGAAAAAAAAAAAAAAAGAAAAAAAAAAG--AAAAAAAAAAAAG 108 consensus_524#2 CGTTGCAACGTTTCACAAAAAAAAAAAAAAAAAGAAAAAAAAAAAG-AAAAAAAAAAAAG 231 * *** * * ************************ ************* consensus_524#0 AAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAG 164 consensus_524#1 AAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAG 168 consensus_524#2 AAAATAGATTGCCTTCGACGGATCCCCGTGTTTCAAAGTAGGACGCGAATAAAAGAAGAG 291 ************************************************************ consensus_524#0 AAAAATATGATCTAAGAGAAAAAGAAGATATGCTATGAGAGATAGACGAAAAAGAGATAG 224 consensus_524#1 AAAAATATGATCTAAGAGAAAAAGAAGATATGCTG-----------------AGAGATAG 211 consensus_524#2 AAAAATATGATCTAAGAGAAAAAGAAGATATGCTATG---------------AGAGATAG 336 ********************************** ******** consensus_524#0 AGAAGGTATAAATATAACGAGAGAGGGGGGGANTGGGGATGATGCATTGGCCCATTTGTT 284 consensus_524#1 AGAAGGTATAAATATAACGAGAGAGGGGGG--GTGGGGATGATGCATTGGCCCATTTGTT 269 consensus_524#2 ACGAAA------------------------------------------------------ 342 * * consensus_524#0 TCTATAAAAAATCGCTCCCGAGTTAGATGCTGGATCGAACGATCGATCGATCGATCCGTG 344 consensus_524#1 TCTATAAAAAATCGCTCCCGAGTTAAATGCTGGATCGAACGATCGATCGATCGATCCGTG 329 consensus_524#2 ------------------------------------------------------------ consensus_524#0 GTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAGGAGCCCAAAAAATGCTTTGCCGT 404 consensus_524#1 GTTTGTCGACAGGGTGTTCCGTGCCCGGGGGGCGTAAAAGCCCAAAAAATGCTTTGCCGT 389 consensus_524#2 ------------------------------------------------------------ consensus_524#0 CGTNCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTA 464 consensus_524#1 CGTGCGCCTCTTTACTTTAGGCTAATAATTTAAACATTAATAATATAATAATAATAATTA 449 consensus_524#2 ------------------------------------------------------------ consensus_524#0 TAATATAATACATGTTACAATAAGATATTATTAGA-- 499 consensus_524#1 TAATATAATACATGTTACAATAAGATATTATTAGATG 486 consensus_524#2 ------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |