These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 621 fasta sequence [GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGTTTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTA] [+] EMBL BI503345 [GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGTTTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAAACCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCAaaaaaaaa ] [+] EMBL BI508754 [ CGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGGTGCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGGTTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTA] [+] EMBL BI516034 [ AATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAAT ] consensusID : consensus_533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGCATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAATCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAAAAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA] [+] EMBL BI506557 [TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGCATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAATCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAAAAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_533#0 GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGT 60 consensus_533#1 -----------------TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGT 43 * ** ** * * * * ***** consensus_533#0 TTATTGGCGTTGTTATTTCAATGCTGTGACGT--GTTTCAAGAGAAAGTGATAATAAGCC 118 consensus_533#1 ACTTCGATTTTAT-ATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTA-CAAGTA 101 * * ** * **** ** ** * * * * * * * ** *** consensus_533#0 AACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACA 178 consensus_533#1 TGTGCAG---ATTATCAAAAGTACAATGTTTATA---TTCAACAAAATGGAAAAAGATCT 155 * * ** *** * * ** * ** * ** ** * * * consensus_533#0 AATAAATCAGAAA--TTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATT 236 consensus_533#1 TCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGAT 215 * * * ** * ** *** * **** * * ** * * * consensus_533#0 TATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGA 296 consensus_533#1 TATTTAGAAATA--CTGTATGGAAAGCATATTTATCAGATTGAATTTAA-TCCTCCACCT 272 ***** *** * * * ** * **** * ** ** * ** * consensus_533#0 CTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTT 356 consensus_533#1 CCAAA-AATTTCTT--------TGATAGAGAAAAGAATCAGAGATTCAGAGACATATGAT 323 * * ** ***** * ** **** * * * * ** * consensus_533#0 AACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGA 416 consensus_533#1 GAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGT--- 380 * ***** * ** * ** ** ** * * *** *** * ** consensus_533#0 ATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTAT 476 consensus_533#1 ATTGGAACATGCGAA--GAAATTTATGAGGAAAAAGAAGCAAA---AAG----------- 424 ** * * * **** * ** *** ** *** *** ** consensus_533#0 TCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTA 536 consensus_533#1 --AAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAA 482 ** * * ** ** * ** * * ** ***** *** ** * consensus_533#0 CTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAA 596 consensus_533#1 ATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA------------- 529 * * * **** * * * ***** ** ** *** ** consensus_533#0 AATGGAAAAAGATCTTCTGGCTTTA 621 consensus_533#1 ------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |