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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 537 cluster # 537       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_537#0 length = 517 sequences # 3  
consensus_537#1 length = 361 sequences # 1  

consensusID : consensus_537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 517
fasta sequence
                              [AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCTCTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTATTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAAAAAAAAAAAATAAAATAAAAATCGCACTATCTTTATCTTTATTTATTTCTGTAATAAGATTTATCGATGCTTAATGCTCATTAACGCTTTTCTTAGCAGTTTTGTTCGATTATTGTCGGCGTTCCTTTCTTGCGTAATTATCT]

[-] EMBL BI516171             [AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCTCTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTATTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAANNNAAGAATGATCCCTGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATAAAATAAAAATCGCACTATCTTTATCTTTATTTATTTCTGTAATAAGATTTATCGATGCTTAATGCTCATTAACGCTTTTCTTAGCAGTTTTGTTCGATTATTGTCGGCGTTCCTTTCTTGCGTAATTATCT]
[+] EMBL BI509827             [                                                                                                  TCCTTTCTCGAGCGCAAATCTATTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAAACAAGAATGATCCCCGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGAGGGACGATAATGGAAAAAAAAAAA                                                                                                                                         ]
[-] EMBL BI505589             [                                                                                                               tttttTCTATTGTCTTCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCGTTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGG       CGATAGCAACGATAATGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACT                                                                                                                                                                          ]


>consensus_537#0 AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCT CTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTA TTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCG TTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATA TCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGT TACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGA CGATAATGGAAAAAAAAAAAAAAATAAAATAAAAATCGCACTATCTTTATCTTTATTTAT TTCTGTAATAAGATTTATCGATGCTTAATGCTCATTAACGCTTTTCTTAGCAGTTTTGTT CGATTATTGTCGGCGTTCCTTTCTTGCGTAATTATCT



consensusID : consensus_537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence
                              [CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATAAAATAAAACGAATAAAAGAAGAGAGACACTTGAAAGGATTACGTTACGAGAAAGCAAAATGATACAAGGAAGCAAAAAAACAAGGAGGATCGTTCGTCCCGTGAGAACATCCTCGCATTTACACTCTAATTACGGTTATTTTACGGGGATTAACCACGCGAGGAACGAGTAAGAAGAAGAA]

[-] EMBL BI516145             [CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATAAAATAAAACGAATAAAAGAAGAGAGACACTTGAAAGGATTACGTTACGAGAAAGCAAAATGATACAAGGAAGCAAAAAAACAAGGAGGATCGTTCGTCCCGTGAGAACATCCTCGCATTTACACTCTAATTACGGTTATTTTACGGGGATTAACCACGCGAGGAACGAGTAAGAAGAAGAA]


>consensus_537#1 CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATATCGGCGATAGCAACGATAA CGAAAAACTACCCTTAACATCGTCGATCGATTGTTACACGCGTGGCACGGGTGGCGATCT TGTCGATCTCTTATCGGGACTTGGGGAGGGGGGACGATAATGGAAAAATAAAATAAAATA AAATAAAACGAATAAAAGAAGAGAGACACTTGAAAGGATTACGTTACGAGAAAGCAAAAT GATACAAGGAAGCAAAAAAACAAGGAGGATCGTTCGTCCCGTGAGAACATCCTCGCATTT ACACTCTAATTACGGTTATTTTACGGGGATTAACCACGCGAGGAACGAGTAAGAAGAAGA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_537#0      AAAGATCGCTATTTATTATACTTAGTTTATTTTCTTCGTCTATATTCCCCACCTCTCCCT 60
consensus_537#1      ------------------------------------------------------------
                                                                                 

consensus_537#0      CTCTCTATCTCTTCCCTCTCTCGTTTTTTCCTCTTTTCTCCTTTCTCGAGCGCAAATCTA 120
consensus_537#1      ------------------------------------------------------------
                                                                                 

consensus_537#0      TTGTCTCCGGGGGAGGGAAAAAAAGAAAAAAAATAAANNAAGAATGATCCCTGTCTCGCG 180
consensus_537#1      ------------------------------------------------------------
                                                                                 

consensus_537#0      TTCGAATCGAGGCGACGACCAACCACGGTGACGACGACACGATCGACGGGCGAAACGATA 240
consensus_537#1      -------------------CAACCACGGTGACGACGACACGATCGACGGGCGAAACGATA 41
                                        *****************************************

consensus_537#0      TCGGCGGATAACGATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGT 300
consensus_537#1      TCGGCG-------ATAGCAACGATAACGAAAAACTACCCTTAACATCGTCGATCGATTGT 94
                     ******       ***********************************************

consensus_537#0      TACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGA 360
consensus_537#1      TACACGCGTGGCACGGGTGGCGATCTTGTCGATCTCTTATCGGGACTTGGGGAGGGGGGA 154
                     ************************************************************

consensus_537#0      CGATAATGGAAAAAAAAAAAAAAATAAAATAAAA-----ATCGCACTATCTTTATCTTTA 415
consensus_537#1      CGATAATGGAAAAATAAAATAAAATAAAATAAAACGAATAAAAGAAGAGAGACACTTGAA 214
                     ************** **** **************     *    *  *     *  *  *

consensus_537#0      TTTATTTC--TGTAATAAGATTTATCGATGCTTA-ATGCTCATTAACGCTTTTCTTAGCA 472
consensus_537#1      AGGATTACGTTACGAGAAAGCAAAATGATACAAGGAAGCAAAAAAACAAGGAGGATCGTT 274
                        *** *  *   * **     *  *** *    * **  *  ***        * *  

consensus_537#0      -GTTTTGTTCGATTATTGTCGGCGTTCCTTTCTTGC-GTAATTATCT------------- 517
consensus_537#1      CGTCCCGTGAGAACATCCTCGCATTTACACTCTAATTACGGTTATTTTACGGGGATTAAC 334
                      **   **  **  **  ***   ** *  ***        **** *             

consensus_537#0      ---------------------------
consensus_537#1      CACGCGAGGAACGAGTAAGAAGAAGAA 361
                                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)