These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_54#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 847 fasta sequence [GCCATGTCTTCTTTGGCCCAGAATTCCTTTTCCGAAAATACGACCAGCGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAATTNNTTCTTTTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAGACTTGACGAATAAGTTATGCCAGNNNGCGAGCTGCTACGTTCTAATCTAAAAGAGGTAATCCGCGCATCCGACCCCTTAGCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAAAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATATAT] [+] EMBL BI507949 [GCCATGTCTTCTTTGGCCCAGAATTCCTTTTCCGAAAATACGACCAGCGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAAAAAAAAAAAA ] [+] EMBL BI516016 [ GACCAGCGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAATTGTTTCTTTTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNNATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCT ] [+] EMBL BI507234 [ GAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATACAT TATATATAatat ] [+] EMBL BI516948 [ ACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCCTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATG TATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAATTNNTTCTTTTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCC ] [+] EMBL BI514538 [ TTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTGTTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAGACTTGACGAATAAGTTATGCCAGNNNGCGAGCTGCTACGTTCTAATCTAAAAGAGGTAATCCGCGCATCCGACCCCTTAGCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAAAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATATAT] consensusID : consensus_54#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence [AAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATTTTCAGCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGCTATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTTGAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTATTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCNNNGCGTTGGTGGCGCGGAGGAACCGGAAGTACTGGTGGACCGCTGCAGGCAGGGCCAGGAATAGTCAGCAACTTTCTCGAAACATCTAAT] [+] EMBL BI509157 [AAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATTTTCAGCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGCTATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTTGAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTATTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCNNNGCGTTGGTGGCGCGGAGGAACCGGAAGTACTGGTGGACCGCTGCAGGCAGGGCCAGGAATAGTCAGCAACTTTCTCGAAACATCTAAT] [+] EMBL BI504932 [AAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATTTTCAGCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGCTATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTTGAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTATTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCAGAGCGTTGGTGGCGCGGAGGAACCGGAAG ] consensusID : consensus_54#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATACATTTGTAAAATGATTTTTTAATTGTTGCTTTTTTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGNNNTTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAG] [+] EMBL BI515093 [GAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATACATTTGTAAAATGATTTTTTAATTGTTGCTTTTTTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGNNNTTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAG] consensusID : consensus_54#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [CGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCGAGCTGCTACGTTCTAATCTAGAAGAGGTAATCCGCGCATCCGACCCCTTNNCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAGAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATAT] [+] EMBL BI512143 [CGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCGAGCTGCTACGTTCTAATCTAGAAGAGGTAATCCGCGCATCCGACCCCTTNNCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAGAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_54#0 GCCATGTCTTCTTTGGCCCAGAATTCCTTTTCCGAAAATACGACCAGCGGAAAAAACGTC 60 consensus_54#2 -------------------------------------------------GAAAAAACGTC 11 consensus_54#3 -----------------------------------------------CGGAAAAAACGTC 13 consensus_54#1 --------------------------------------------------AAAAAACGTC 10 ********** consensus_54#0 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 120 consensus_54#2 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 71 consensus_54#3 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 73 consensus_54#1 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 70 ************************************************************ consensus_54#0 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 180 consensus_54#2 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 131 consensus_54#3 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 133 consensus_54#1 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 130 ************************************************************ consensus_54#0 GATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 240 consensus_54#2 GATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 191 consensus_54#3 GACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 193 consensus_54#1 GATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 190 ** ********************************************************* consensus_54#0 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTA 300 consensus_54#2 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTA 251 consensus_54#3 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCGAGCTG 253 consensus_54#1 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATT 250 ************************************************** * * consensus_54#0 CTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTAT-ATATAATGTATATAT 359 consensus_54#2 CTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTAT-ATATAATGTATATAT 310 consensus_54#3 CT-ACGTTCTAATCTAGAAGAGGTAATCCGCGCATCCGACCCCT-TNNCAGCCTG-GCAC 310 consensus_54#1 TTCA-GCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGC-T 308 * * * * * * * * * consensus_54#0 ATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAAT------TNNT 413 consensus_54#2 ATATATATATATA--------------CATTTGTAAAATGATTTTTTAAT------TGTT 350 consensus_54#3 GTGTCTGAA-ACA---------------CCTTGTGG--------TTTGAT------TGCG 340 consensus_54#1 ATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTT 368 * * * * ** * * consensus_54#0 TCTT-TTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAAT-C-GGTATTTG 470 consensus_54#2 GCTT-TTTTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAAT-C-GNNNTTTG 407 consensus_54#3 GCAT-TTACTTGCGAAGCTGATGCAGAAAAATTGTTGCAACGTGGCGAT-TTGGCACGTG 398 consensus_54#1 GAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTA 428 ** * ** * * * * * * consensus_54#0 TTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATA-TGAGAAATGCTTTTTTTCT 529 consensus_54#2 TTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATA-TGAGAAATGCTTTTTTTCT 466 consensus_54#3 TT-TTCGAAGGACCTGTACAAGTATTTATTATCCTATCCA-TTCCAATTCCTTATTT--- 453 consensus_54#1 TTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCNNNGCGTTGG 488 ** * ** * * ** * * * * consensus_54#0 CAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTA 589 consensus_54#2 CAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTA 526 consensus_54#3 ----GTAATTTATACATATATATAT----------------------------------- 474 consensus_54#1 TGGCGCGGAGGAACCGGAAGTACTGGTGGACCGCT--GCAGGCAGGGCCAGGAATAGTCA 546 * * consensus_54#0 GACTTGACGAATAAGTTATGCCAGNNNGCGAGCTGCTACGTTCTAATCTAAAAGAGGTAA 649 consensus_54#2 G----------------------------------------------------------- 527 consensus_54#3 ------------------------------------------------------------ consensus_54#1 GCAACTTTCTCGAAACATCTAAT------------------------------------- 569 consensus_54#0 TCCGCGCATCCGACCCCTTAGCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTG 709 consensus_54#2 ------------------------------------------------------------ consensus_54#3 ------------------------------------------------------------ consensus_54#1 ------------------------------------------------------------ consensus_54#0 CGGCATTTACTTGCGAAGCTGATGCAAAAAAATTGTTGCAACGTGGCGATTTGGCACGTG 769 consensus_54#2 ------------------------------------------------------------ consensus_54#3 ------------------------------------------------------------ consensus_54#1 ------------------------------------------------------------ consensus_54#0 TTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAAT 829 consensus_54#2 ------------------------------------------------------------ consensus_54#3 ------------------------------------------------------------ consensus_54#1 ------------------------------------------------------------ consensus_54#0 TTATACATATATATATAT 847 consensus_54#2 ------------------ consensus_54#3 ------------------ consensus_54#1 ------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |