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Apis mellifera
cluster # 541 cluster # 541       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_541#0 length = 779 sequences # 2  
consensus_541#1 length = 392 sequences # 2  

consensusID : consensus_541#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence
                              [CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCAAACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATTTCTCAGTTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTTTTTTCATTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATAAGAATCTTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATAACATTTATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGATGTTA]

[+] EMBL BI505590             [CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCAAACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATTTCTCAGTTTTATTATTTAAAAATT                                                                                                                                                                                                                             ]
[+] EMBL BI503247             [                                                                                                                                                                                                                                                                                                                      TTTTTTTTTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCAAACGTACGTATTTGTTGTAATTATACTATATCAATTTTATTACAAAATTATATTTTTCAGTTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTTTTTTCATTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATAAGAATCTTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATAACATTTATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGATGTTA]


>consensus_541#0 CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACA GCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATC AATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATAC GTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGA TATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTA TCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAA ACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGAC ATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCA AACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATTTCTCAG TTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTTTTTTCA TTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATAAGAATC TTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATAACATTT ATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGATGTTA



consensusID : consensus_541#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 392
fasta sequence
                              [ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAATAATTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI506781             [ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAATAATTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI505520             [ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAATAATTAAAAAAAAAAAAAA       ]


>consensus_541#1 ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCC ATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGT TATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGA ACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGA GGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTT TCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGAT AGGGAATAATTAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_541#0      ------CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCC 54
consensus_541#1      ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCC 60
                           ******************************************************

consensus_541#0      ATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGT 114
consensus_541#1      ATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGT 120
                     ************************************************************

consensus_541#0      TATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGA 174
consensus_541#1      TATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGA 180
                     ************************************************************

consensus_541#0      ACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGA 234
consensus_541#1      ACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGA 240
                     ************************************************************

consensus_541#0      GGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTT 294
consensus_541#1      GGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTT 300
                     ************************************************************

consensus_541#0      TCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGAT 354
consensus_541#1      TCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGAT 360
                     ************************************************************

consensus_541#0      AGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCA 414
consensus_541#1      AGGGAA--TAATTAAAAAAAAAAAAAAAAAAAAA-------------------------- 392
                     ******  * * *       **    ** * **                           

consensus_541#0      CGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGG 474
consensus_541#1      ------------------------------------------------------------
                                                                                 

consensus_541#0      AAATCAAACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATT 534
consensus_541#1      ------------------------------------------------------------
                                                                                 

consensus_541#0      TCTCAGTTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTT 594
consensus_541#1      ------------------------------------------------------------
                                                                                 

consensus_541#0      TTTTCATTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATA 654
consensus_541#1      ------------------------------------------------------------
                                                                                 

consensus_541#0      AGAATCTTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATA 714
consensus_541#1      ------------------------------------------------------------
                                                                                 

consensus_541#0      ACATTTATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGA 774
consensus_541#1      ------------------------------------------------------------
                                                                                 

consensus_541#0      TGTTA 779
consensus_541#1      -----
                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)