These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCAAACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATTTCTCAGTTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTTTTTTCATTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATAAGAATCTTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATAACATTTATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGATGTTA] [+] EMBL BI505590 [CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCAAACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATTTCTCAGTTTTATTATTTAAAAATT ] [+] EMBL BI503247 [ TTTTTTTTTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCACGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGGAAATCAAACGTACGTATTTGTTGTAATTATACTATATCAATTTTATTACAAAATTATATTTTTCAGTTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTTTTTTCATTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATAAGAATCTTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATAACATTTATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGATGTTA] consensusID : consensus_541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 392 fasta sequence [ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAATAATTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI506781 [ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAATAATTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI505520 [ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCCATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGTTATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGAACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGAGGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTTTCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGATAGGGAATAATTAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_541#0 ------CTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCC 54 consensus_541#1 ATCTTGCTGGCATTTATCATCACCTGGACACCGTACAATATTCTCGTTCTAATTAAATCC 60 ****************************************************** consensus_541#0 ATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGT 114 consensus_541#1 ATCACAGCCTGCTCGTGGTACATCCCGCAAGAGCTCTGGGACTTTTTCTATTATCTTTGT 120 ************************************************************ consensus_541#0 TATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGA 174 consensus_541#1 TATATCAATAGTACTGTGAATCCAATGTGTTACGCCTTGTGCAATGCGGCATTCCGACGA 180 ************************************************************ consensus_541#0 ACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGA 234 consensus_541#1 ACATACGTAAGGATTCTCAAGTGCAAGTGGCATAATAGAAACAGAGCCGCGATTGACAGA 240 ************************************************************ consensus_541#0 GGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTT 294 consensus_541#1 GGATGATATCAGTAGAAACGCCCAGCATGCGACATCTGCACGCTTATGGGCGTACTATTT 300 ************************************************************ consensus_541#0 TCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGAT 354 consensus_541#1 TCTCTATCATTTTCTCTCTTCTCCTTTTTAATCATTCCTCCGAACGTGCTTGCCGATGAT 360 ************************************************************ consensus_541#0 AGGGAAACTGAGTTGCTTTCAATTGTAATATAACCTATACTAATAAATGTTTACATTTCA 414 consensus_541#1 AGGGAA--TAATTAAAAAAAAAAAAAAAAAAAAA-------------------------- 392 ****** * * * ** ** * ** consensus_541#0 CGTGACATTTTCGTCACTTTCGCTCAACATTATTATGTATATCTTACTTTTGTTAATTGG 474 consensus_541#1 ------------------------------------------------------------ consensus_541#0 AAATCAAACGTACGTATTTGTTNNAATTATACTATATCAATTTTATTACAAAATTATATT 534 consensus_541#1 ------------------------------------------------------------ consensus_541#0 TCTCAGTTTTATTATTTAAAAATTTATTACATGAGCACTAATATTGGTCTTTAATCTTTT 594 consensus_541#1 ------------------------------------------------------------ consensus_541#0 TTTTCATTTCGTTTCTATAGATATGGGTAACAAGAGAATAGTAGTTTTGAAAATATCATA 654 consensus_541#1 ------------------------------------------------------------ consensus_541#0 AGAATCTTTTTTAAGATGAATAAACTTTCGAAAAATTATGATAAAATGATTTGTAATATA 714 consensus_541#1 ------------------------------------------------------------ consensus_541#0 ACATTTATACAAATCGAAAAACAGCTAAAAACATTATACTCAAAAATTTTGTTTCATAGA 774 consensus_541#1 ------------------------------------------------------------ consensus_541#0 TGTTA 779 consensus_541#1 ----- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |