These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence [GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCGACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGAGGTCANNNACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG] [+] EMBL BI503127 [GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCGACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGAGGTCANNNACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG] [+] EMBL BI504367 [GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACCGATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATCGGCGACGGAGTCGTGGAGAGCATCATGAGAGGCGAGGTCGTCGGCATGACACCGAGGAGGTCGAGGTCATCGACTGCTCTGACGCACGCGCTTGTTGTGCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGCAGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGGCCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCC ] consensusID : consensus_555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 445 fasta sequence [AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATATGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTCGTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGG] [+] EMBL BI509656 [AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATATGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTCGTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGTGGTGG] [+] EMBL BI505219 [AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATATGTATGTATATATATATATATATATATACACATATATATATATACATATATCGGTTTCTCGTGACGCGTCACGCGCGATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGCTGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGCACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAGACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAGGATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCGGCGGCGACGGGTGAGCGAGGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_555#0 ------------------------------------------------------------ consensus_555#1 AACACGTCGCATTTCAAGTGGAGGATTTTACACAGAATCGTGAGAGGAGGTGGGTGTATA 60 consensus_555#0 ----GGTACACTGCCGTCATCGTTGGTTACAACGAGTCGACCAAGGATTTGACCGTCACC 56 consensus_555#1 TGTATGTATA-TATATATATATATATATACACATATATATATATACATATATCGGTTTCT 119 *** * * ** * **** * * ** * * ** * consensus_555#0 GATGACACAGTTCTCGAGGACCACAACGAGGACCCCAGCCTAGTACAAATGCGGTTGATC 116 consensus_555#1 CGTGACGCGTCACGCGCG-ATTTTAATTCTAACCTCGACGGTCGATGAATGATTGTGTGC 178 **** * * ** * * ** *** * * * **** ** * consensus_555#0 GGCGACGGA-GTCGTGGAG----AGCATCATGAGAGGCGAGGTCGTCGGCATGA-----C 166 consensus_555#1 TGTGTCAAGTAAAGTGAAAGTCAAGCGCGACGGACGGCCATATTTCATGGATAAACGTGC 238 * * * *** * *** * * *** * * * ** * * consensus_555#0 ACCGAGGAGGTCGA----GGTCANNNACTGCTCTGACGCAC--GCGCTTGTTGTGCCGAG 220 consensus_555#1 ACCATAGTGACCGGCTCGAACTGGTTACAATCCCACGGTTCCAACGCCACGAGACCCGAG 298 *** * * ** ** * * * *** * ***** consensus_555#0 ACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAG 280 consensus_555#1 ACCTGGAAGGAGGCCCCGAGGACGTCCTGGGAACGCCACACAGTTGCACACAGCGCCTAG 358 ************************************************************ consensus_555#0 GATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCG 340 consensus_555#1 GATACAAAGCCCTATTTCTCAGCATCTCGAGAAAGAGAAGAACTCTGCGCGCAACAGCCG 418 ************************************************************ consensus_555#0 GCGGCGACGGGTGAGCGAGGGTGGTGGAGGCGGGAGCCGCGAGAAGGAGGCAGCGGTAGC 400 consensus_555#1 GCGGCGACGGGTGAGCGAGGGTGGTGG--------------------------------- 445 *************************** consensus_555#0 AGCGGGCGAGGGTGGGAACGTATCGTCGTGCCGGCAGTCGGAGGACAGGGAGAATAAGGG 460 consensus_555#1 ------------------------------------------------------------ consensus_555#0 CCCCGCGTCGTCGGGCAGGCCCGGCAATCGCGTGCCACGGCCCGTCTTGGTTGCGGAGG 519 consensus_555#1 ----------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |