These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_56#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1180 fasta sequence [GGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAAAGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCGTGGCTCGTCGCGAAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTCGACGATTCAA--ATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGAAANNNATGGGAAAAAGGACGAACGCGAATTTCGAAATGTACGAAATCAGACGAGAGAAAGGGGGCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGGAGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAATCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTCACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTCACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGATCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAACAACGATTCGTTAAACGGGCGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTTTACGCTTTCCCTTTGCCGCACGGTCGTCCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCG] [+] EMBL BI513869 [GGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAAAGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCGTGGCTCGTCGCGAAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTCGACGATTCAA ATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGA ] [+] EMBL BI513955 [GGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAAAGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCGTGGCTCGTCGCGAAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTCGACGATTCAA ATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTAT ] [-] EMBL BI505919 [ CTCGACGATTCAAATATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGAAAGAGATGGGAAAAAGGACGAACGCGAATTTCGAAATGTACGAAATCAGACGAGAGAAAGGGGGCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGGAGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAATCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTCACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTCACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGATCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAAC ] [-] EMBL BI508358 [ TTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGAAANNNATGGGAAAAAGGACGAACGCGAATTTCGAAATGTACGAAATCAGACGAGAGAAAGGGGGCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGC ] [-] EMBL BI506961 [ AAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGGAGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAATCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTCACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTCACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGATCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAACAACGATTCGTTAAACGGGCGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTTTACGCTTTCCCTTTGCCGCACGGTCGTCCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCG] consensusID : consensus_56#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 852 fasta sequence [TCAATCATTTATATATCTCTCTTCTTGTTTAAATAATTAGATCTGTCGGATGCGTAATCACGTATCACCGAGTAGTAGGAAAAATCGCTCAGGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACCTTTCCGCGAACAAAGGGAAGGAGAGTGTGCACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAAAGAAAAAAAACAAAGAAAAAATAAAAAAAAAAACAGGATTACGCGCGAACACCCTCTTTACACCAGCAATTGTTACAAATTANNTTTCCCTCGCAGAGAGAGATGGAATCGCGTAAATAAATAAATAAATAAA-AAATTAGTCACCTTCCCTTTGCGTATTTATAGGGAGAGTGTTGCCCGCTTCTACGTTCGAATTGAAAAAACAGGTTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAACGAAACAAGTGTCAAGAATGTTCTGACGGAGGCTCGTCCGATTTTTACAAAAAAAAAGGAAAAAAAAAAAGAGGAAAAGAAAAACGCTCGAGACGTACGCGTATTATTCTCAATGGACACACGTACGATCGATCGTTCGTCTTTGAAAATTTCGATCGATTTCTTGACGGTGCCTACGTTCCTAATTGCTTCCAAACCTCAGGGGTGAGAAAGAGAGAGAGAGGGAGAGAGAAAGAGCGAAAGAGAGAAAGAGAGGGA] [-] EMBL BI509882 [TCAATCATTTATATATCTCTCTTCTTGTTTAAATAATTAGATCTGTCGGATGCGTAATCACGTATCACCGAGTAGTAGGAAAAATCGCTCAGGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACCTTTCCGCGAACAAAGGGAAGGAGAGTGTGCACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAAAGAAAAAAAACAAAGAAAAAATAAAAAAAAAAACAGGATTACGCGCGAACACCCTCTTTACACCAGCAATTGTTACAAATTAGATTTTCCTCGCAGAGAGAGATGGAATCGCGTAAATAAATAAATAAATAAATAAATTAGTCACCTTCCCTTTGCGTATTTATAAGGAGAGTGTTGCCCGCTTCTACGTTCGAATTGAAAAAACAGGTTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAAC ] [+] EMBL BI508104 [ CACCAGCAATTGTTACAAATTANNTTTCCCTCGCAGAGAGAGATGGAATCGCGTAAATAAATAAATAAAT AAATTAGTCACCTTCCCTTTGCGTATTTATAGGGAGAGTGTTGCCCGCTTCTACGTTCGAATTGAAAAAACAGGTTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAACGAAACAAGTGTCAAGAATGTTCTGACGGAGGCTCGTCCGATTTTTACAAAAAAAAAGGAAAAAAAAAAAGAGGAAAAGAAAAACGCTCGAGACGTACGCGTATTATTCTCAATGGACACACGTACGATCGATCGTTCGTCTTTGAAAATTTCGATCGATTTCTTGACGGTGCCTACGTTCCTAATTGCTTCCAAACCTCAGGGGTGAGAAAGAGAGAGAGAGGGAGAGAGAAAGAGCGAAAGAGAGAAAGAGAGGGA] consensusID : consensus_56#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [CGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTGTACGCTTTCCCCTTGCCGCACGGTCGTCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAGGTCGGAAAAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCGCCTCGACGAATCGAAAATCAATTCAAGAATTATTCGGAGAATTATTTGGAGGTCCCCTTCGGTTGATCGAACCGGCGATGCTCGCTCGAACGTATCGGATAGCAAAGAGCGCGTGGACGGTGGAAAGAAGGAATAATTTTCGGAGCCATGTAGCTCGGTTTCGCAACAGCCTCTCTCTGCCTCGCTCGGATATTTTTTTCCGGGCGGCGATCACAGTCACTCGTCTCTCCTTTTTTTTCCCGGCCCCGAAGTGGTTATTTTCTCTCCTTCTTCTCTCTTCTCCTCGGTATCCGGTTTCCTCTCTCGGGATCTTGGAAAGCGAGCGAAAGATACC] [-] EMBL BI516213 [CGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTGTACGCTTTCCCCTTGCCGCACGGTCGTCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAGGTCGGAAAAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCGCCTCGACGAATCGAAAATCAATTCAAGAATTATTCGGAGAATTATTTGGAGGTCCCCTTCGGTTGATCGAACCGGCGATGCTCGCTCGAACGTATCGGATAGCAAAGAGCGCGTGGACGGTGGAAAGAAGGAATAATTTTCGGAGCCATGTAGCTCGGTTTCGCAACAGCCTCTCTCTGCCTCGCTCGGATATTTTTTTCCGGGCGGCGATCACAGTCACTCGTCTCTCCTT ] [-] EMBL BI512605 [ ACTTCCCTCTTTCTTCGCCTCGACGAATCGAAAATCAATTCAAGAATTATTCGGAGAATTATTTGGAGGTCCCCTTCGGTTGATCGAACCGGCGATGCTCGCTCGAACGTATCGGATAGCAAAGAGCGCGTGGACGGTGGAAAGAAGGAATAATTTTCGGAGCCATGTAGCTCGGTTTCGCAACAGCCTCTCTCTGCCTCGCTCGGATATTTTTTTCCGGGCGGCGATCACAGTCACTCGTCTCTCCTTTTTTTTCCCGGCCCCGAAGTGGTTATTTTCTCTCCTTCTTCTCTCTTCTCCTCGGTATCCGGTTTCCTCTCTCGGGATCTTGGAAAGCGAGCGAAAGATACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_56#0 ------------------------------------------------------------ consensus_56#2 ------------------------------------------------------------ consensus_56#1 TCAATCATTTATATATCTCTCTTCTTGTTTAAATAATTAGATCTGTCGGATGCGTAATCA 60 consensus_56#0 -------------------------------GGATAACGCGGAAGGCATGCCTGGTACGA 29 consensus_56#2 ------------------------------------------------------------ consensus_56#1 CGTATCACCGAGTAGTAGGAAAAATCGCTCAGGATAACGCGGAAGGCATGCCTGGTACGA 120 consensus_56#0 GGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAA 89 consensus_56#2 ------------------------------------------------------------ consensus_56#1 GGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACCTTTCCGCGAACAA 180 consensus_56#0 AGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCT 149 consensus_56#2 ------------------------------------------------------------ consensus_56#1 AGGGAAGGAGAGTGTGCACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCT 240 consensus_56#0 TCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCG 209 consensus_56#2 ------------------------------------------------------------ consensus_56#1 TCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCG 300 consensus_56#0 GTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCG-TGGCTCGTCGCG 268 consensus_56#2 ------------------------------------------------------------ consensus_56#1 GTATCGCGACGCCTCGTTTGAAAAAAAAGAAAAAAAACAAAGAAAAAATAAAAAAAAAAA 360 consensus_56#0 AAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTC 328 consensus_56#2 ------------------------------------------------------------ consensus_56#1 CAGGATTACGCGCGAACACCCTCTTTACACCAGCAATTGTTACAAATTANNTTTCC-CTC 419 consensus_56#0 GACGATTCAAATATATATATACACAT-ATATTCGTCTCTGAGAGAAGACTAATTTAATCG 387 consensus_56#2 -----CGGCATCGTTCGCATGCTCGTCATGCTCGTCA-TGCCTTTGCACTCTCTTCCTT- 53 consensus_56#1 GCAGAGAGAGATGGAATCGCGTAAAT-AAATAAATAAATAAAAAATTAGTCACCTTCCCT 478 * * * * * * * consensus_56#0 ATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGG--GC 445 consensus_56#2 ---CTTTATGCTCTCCCTGTACGCTTTCCCCTTGCCGCACGGTCGTCCTACTCCCGT-GT 109 consensus_56#1 ---TTGCGTATTTATAGGGAGAGTGTTGCCCGC-TTCTACGTTCGAATTGAAAAAACAGG 534 * * * ** * *** * * consensus_56#0 GCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGG--AAANNNAT 503 consensus_56#2 CCACTCTCGTGTCGTATCGTGTTCAAGAT-GCGATT-CAACACAGCGCGG--AAGGTCGG 165 consensus_56#1 TTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAA 594 * * * * * ** ** ** consensus_56#0 GGGAAAAAGGA-CGAACGCGAATTTCGAAATGTACG---AAATCAGACGAGAGAAAGGGG 559 consensus_56#2 AAAAAATCGAAATCCGGATGGACTTCCCTCTTTCTT---CGCCTCGACGAATCGAAAA-- 220 consensus_56#1 CGAAACAAGTGTCAAGAATGTTCTGACGGAGGCTCGTCCGATTTTTACAAAAAAAAAGGA 654 ** * * * ** * ** consensus_56#0 GCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAA 619 consensus_56#2 TCAATTCAAGAATTATTCGGAGAATTATTTGGAG-GTCCCCTTCGGTTGATCG----AAC 275 consensus_56#1 AAAAAAAAAAGAGGAA-AAGAAAAACGCTCGAGACGTACGCGTATTATTCTCAATGGACA 713 * * * * ** * * * * * consensus_56#0 GGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGG 679 consensus_56#2 CGGCGATGCTCGCTCGAACGT----ATCGGATAGCAAAG--AGCGCGTGGA---CGGTGG 326 consensus_56#1 CACGTACGATCGATCGTTCGT---CTTTGAAAATTTCGATCGATTTCTTGA---CGGTGC 767 * *** * *** * * ** ** ** consensus_56#0 AGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAA 739 consensus_56#2 AAAGAAG--GAATAATTT-TCGGAGCCATGTAGCTCGGTTTCGCAA-----------CAG 372 consensus_56#1 CTACGTTCCTAAT--TGCTTCCAAACCTCAGGGGTGAGAAAGAGAGAGAGAGGGAGAGAG 825 * * * ** * * * * consensus_56#0 TCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTC 799 consensus_56#2 CCTCTCTC-TGCCTCG----------------CTCGGATATTTTTTTCCGGGCGGCGATC 415 consensus_56#1 AAAGAGCGAAAGAGAGAAAGAGAGGGA--------------------------------- 852 * consensus_56#0 ACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTC 859 consensus_56#2 ACAGTCACTCGTCTCTCCTTTTTTTTCCCGGC--CCCGAAGTGGTTATTTTCTCTCCTTC 473 consensus_56#1 ------------------------------------------------------------ consensus_56#0 ACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGA 919 consensus_56#2 TTCTCTCTTCTCCTCGGTATCCGGTTTCCTCTCTCGGGATCT-TGGAAAGCGAGCGAAAG 532 consensus_56#1 ------------------------------------------------------------ consensus_56#0 TCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAACAACGATTCGT 979 consensus_56#2 ATACC------------------------------------------------------- 537 consensus_56#1 ------------------------------------------------------------ consensus_56#0 TAAACGGGCGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCT 1039 consensus_56#2 ------------------------------------------------------------ consensus_56#1 ------------------------------------------------------------ consensus_56#0 TCTTTATGCTCTCCCTTTACGCTTTCCCTTTGCCGCACGGTCGTCCCTACTCCCGTGTCC 1099 consensus_56#2 ------------------------------------------------------------ consensus_56#1 ------------------------------------------------------------ consensus_56#0 ACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAATCGAAATCCGG 1159 consensus_56#2 ------------------------------------------------------------ consensus_56#1 ------------------------------------------------------------ consensus_56#0 ATGGACTTCCCTCTTTCTTCG 1180 consensus_56#2 --------------------- consensus_56#1 --------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |