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Apis mellifera
cluster # 561 cluster # 561       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_561#0 length = 615 sequences # 3  
consensus_561#1 length = 328 sequences # 1  

consensusID : consensus_561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 615
fasta sequence
                              [CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGATTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATACATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGACGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGAAATGAACCAATAAATCGAA]

[+] EMBL BI503107             [CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTNNNTTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATTGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACTATCTTTTTCACAAAAAAATATTCGTTTCTCTCTCTTTTTCTTTCTTGTCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGCGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAGATTTAAGATAGCTGAGAATGGACTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAAAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGAAGATACATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGACGATACGAAAA                                                                ]
[+] EMBL BI511081             [                          TACATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGATTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATAC                                                                                                                                          ]
[+] EMBL BI504562             [                            CATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGATTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATACATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGACGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGAAATGAACCAATAAATCGAA]


>consensus_561#0 CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTT TTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGT GCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTAT TCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCT TTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAAT ATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGA TTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGC GAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATACATC GCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGA CGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGAAATG AACCAATAAATCGAA



consensusID : consensus_561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [GTCATAGATATCTACATTTTGTTATATTAATTTTATGTATTTCTTGATATGAGTGATAGTATAGAGAAAAAATCAGATTTTATTGTATCATTGGATGATTTATAACAGTAGTATAATATGCAAATAAGAAACAAATGGATATCCATTGTAGAAATAATGCACATCAATTGTATAATATCATTACGATTTAACAAATTTATTTCAAAACGACGTATACGATGTATAATTTTATTTAACAGAGATGAAAAAGTCGATCTCTGTTCTATCTTCAGTAATTGGCCAAAAATTAGAAGTCTATTCGATTTATTGGTTCATTTCTGAAAGATTA]

[+] EMBL BI513691             [GTCATAGATATCTACATTTTGTTATATTAATTTTATGTATTTCTTGATATGAGTGATAGTATAGAGAAAAAATCAGATTTTATTGTATCATTGGATGATTTATAACAGTAGTATAATATGCAAATAAGAAACAAATGGATATCCATTGTAGAAATAATGCACATCAATTGTATAATATCATTACGATTTAACAAATTTATTTCAAAACGACGTATACGATGTATAATTTTATTTAACAGAGATGAAAAAGTCGATCTCTGTTCTATCTTCAGTAATTGGCCAAAAATTAGAAGTCTATTCGATTTATTGGTTCATTTCTGAAAGATTA]


>consensus_561#1 GTCATAGATATCTACATTTTGTTATATTAATTTTATGTATTTCTTGATATGAGTGATAGT ATAGAGAAAAAATCAGATTTTATTGTATCATTGGATGATTTATAACAGTAGTATAATATG CAAATAAGAAACAAATGGATATCCATTGTAGAAATAATGCACATCAATTGTATAATATCA TTACGATTTAACAAATTTATTTCAAAACGACGTATACGATGTATAATTTTATTTAACAGA GATGAAAAAGTCGATCTCTGTTCTATCTTCAGTAATTGGCCAAAAATTAGAAGTCTATTC GATTTATTGGTTCATTTCTGAAAGATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_561#0      CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTT 60
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      TTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGT 120
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      GCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTAT 180
consensus_561#1      ------------------GTCATAGATATCTACATTT-TGTTATATTAATTTTATGTATT 41
                                       ****    ** ** ** ** ** ****  *** *    *  *

consensus_561#0      TCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCT 240
consensus_561#1      TCTTGATATGAGTGATAGTATAGAGAAAAAATCAGAT---TTTATTGTATCATTGGATGA 98
                     *** ** * **    *   * * * *** * **   *   * * ** * ** *   **  

consensus_561#0      TTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAAT 300
consensus_561#1      TTTATAACAGTAGTATAATATGCAAATAAGAAACAAATGG--ATATCC-ATTGTAGAAAT 155
                     **    ***  *  ***    * **  *       **  *   ****  ** **   ***

consensus_561#0      ATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGA 360
consensus_561#1      AATGCACATCAATT-GTATAATA--TCATTACGATTTAACA-AATTTATTTCAAAACGAC 211
                     * * ** *  ****  ** ** *  * *  * * ** **   **  **  * * ** *  

consensus_561#0      TTATTAAATTTGACCAATTCTTCTCAATGAAGA--ATATACTCAATCAAAGAA--ACTTT 416
consensus_561#1      GTATACGATGTA--TAATTTTATTTAACAGAGATGAAAAAGTCGATCTCTGTTCTATCTT 269
                      ***   ** *    **** *  * **   ***  * * * ** ***   *    *  **

consensus_561#0      AAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATA 476
consensus_561#1      CAGTAATTGGCCAAAAATTAGAAGTCTATTCGATTTA-TTGGTTCATTTCTGAAAGATTA 328
                      **  *     **  ** * **    *  *   **** **  * *  **     * * **

consensus_561#0      CATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGA 536
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      CAGACGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGA 596
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      AATGAACCAATAAATCGAA 615
consensus_561#1      -------------------
                                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)