These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 615 fasta sequence [CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGATTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATACATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGACGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGAAATGAACCAATAAATCGAA] [+] EMBL BI503107 [CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTNNNTTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATTGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACTATCTTTTTCACAAAAAAATATTCGTTTCTCTCTCTTTTTCTTTCTTGTCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGCGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAGATTTAAGATAGCTGAGAATGGACTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAAAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGAAGATACATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGACGATACGAAAA ] [+] EMBL BI511081 [ TACATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGATTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATAC ] [+] EMBL BI504562 [ CATTTGCCTAAAGTAGAGCTACACAGTCGCTTTTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGTGCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTATTCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCTTTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAATATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGATTATTAAATTTGACCAATTCTTCTCAATGAAGAATATACTCAATCAAAGAAACTTTAAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATACATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGACAGACGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGAAATGAACCAATAAATCGAA] consensusID : consensus_561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [GTCATAGATATCTACATTTTGTTATATTAATTTTATGTATTTCTTGATATGAGTGATAGTATAGAGAAAAAATCAGATTTTATTGTATCATTGGATGATTTATAACAGTAGTATAATATGCAAATAAGAAACAAATGGATATCCATTGTAGAAATAATGCACATCAATTGTATAATATCATTACGATTTAACAAATTTATTTCAAAACGACGTATACGATGTATAATTTTATTTAACAGAGATGAAAAAGTCGATCTCTGTTCTATCTTCAGTAATTGGCCAAAAATTAGAAGTCTATTCGATTTATTGGTTCATTTCTGAAAGATTA] [+] EMBL BI513691 [GTCATAGATATCTACATTTTGTTATATTAATTTTATGTATTTCTTGATATGAGTGATAGTATAGAGAAAAAATCAGATTTTATTGTATCATTGGATGATTTATAACAGTAGTATAATATGCAAATAAGAAACAAATGGATATCCATTGTAGAAATAATGCACATCAATTGTATAATATCATTACGATTTAACAAATTTATTTCAAAACGACGTATACGATGTATAATTTTATTTAACAGAGATGAAAAAGTCGATCTCTGTTCTATCTTCAGTAATTGGCCAAAAATTAGAAGTCTATTCGATTTATTGGTTCATTTCTGAAAGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_561#0 CTTCTTATTCTCTCGTACCTAAAATATACATTTGCCTAAAGTAGAGCTACACAGTCGCTT 60 consensus_561#1 ------------------------------------------------------------ consensus_561#0 TTACATTGAAAAATAACTATGCTTACATATGTTGCCTACGAGGAAGTATCGCACCTTCGT 120 consensus_561#1 ------------------------------------------------------------ consensus_561#0 GCAGTTTCTCTCCATTGTGTCACGAGTAGCTTCAATTGTGATATAACAATGTCGACTTAT 180 consensus_561#1 ------------------GTCATAGATATCTACATTT-TGTTATATTAATTTTATGTATT 41 **** ** ** ** ** ** **** *** * * * consensus_561#0 TCTGGACACGATCTTTTTCACAAAAAAATATTCGTTTCTCTCTTTTTTTTCTTCTTATCT 240 consensus_561#1 TCTTGATATGAGTGATAGTATAGAGAAAAAATCAGAT---TTTATTGTATCATTGGATGA 98 *** ** * ** * * * * *** * ** * * * ** * ** * ** consensus_561#0 TTCTGTACATAACGATAGATGGTAATCACTCGTTTAACCGTGTTATCTGATCGTGATAAT 300 consensus_561#1 TTTATAACAGTAGTATAATATGCAAATAAGAAACAAATGG--ATATCC-ATTGTAGAAAT 155 ** *** * *** * ** * ** * **** ** ** *** consensus_561#0 ATTCCATAATAATTTATACAACAGATAACAATGTTTAAATTTAAGATAGCTGAGAATGGA 360 consensus_561#1 AATGCACATCAATT-GTATAATA--TCATTACGATTTAACA-AATTTATTTCAAAACGAC 211 * * ** * **** ** ** * * * * * ** ** ** ** * * ** * consensus_561#0 TTATTAAATTTGACCAATTCTTCTCAATGAAGA--ATATACTCAATCAAAGAA--ACTTT 416 consensus_561#1 GTATACGATGTA--TAATTTTATTTAACAGAGATGAAAAAGTCGATCTCTGTTCTATCTT 269 *** ** * **** * * ** *** * * * ** *** * * ** consensus_561#0 AAGCGAAAAATCAGGAAATCGATAAATGATAAGTTTAGTTATTACGCTTTACCGATAATA 476 consensus_561#1 CAGTAATTGGCCAAAAATTAGAAGTCTATTCGATTTA-TTGGTTCATTTCTGAAAGATTA 328 ** * ** ** * ** * * **** ** * * ** * * ** consensus_561#0 CATCGCTGGTTCGAATCCGTCTGATGATAAAGTAGGAATTACGGAAGGAGCATGTATTGA 536 consensus_561#1 ------------------------------------------------------------ consensus_561#0 CAGACGATACGAAAAATTTCTTGACCGATCGAGGATAATCTTCATTCTTAATCTTTCAGA 596 consensus_561#1 ------------------------------------------------------------ consensus_561#0 AATGAACCAATAAATCGAA 615 consensus_561#1 ------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |