These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [TACATCCAAATGAATAGATCGCAAATGTCTGTTAATTGTTGATACAAACAAATACTTGAATTCGTCTTTGATGTTGTATCTCACCATTCTTTACTGATTATTGTCCCATCTGATATAGGTCGAAACCTACGACATCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTG] [-] EMBL BI517100 [TACATCCAAATGAATAGATCGCAAATGTCTGTTAATTGTTGATACAAACAAATACTTGAATTCGTCTTTGATGTTGTATCTCACCATTCTTTACTGATTATTGTCCCATCTGATATAGGTCGAAACCTACGACATCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTG] consensusID : consensus_578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 482 fasta sequence [TGATTGATTGAACTATTCTATGTATTCTATGTAAAAGAAAAAAGTTTATATACCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTGCCTTTGACAGCTAAAATTTGGCAATATTAGTATCGCTAA] [-] EMBL BI504116 [TGATTGATTGAACTATTCTATGTATTCTATGTAAAAGAAAAAAGTTTATATACCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTGCCTTTGACAGCTAAAATTTGGCAATATTAGTATCGCTAA] [+] EMBL BI517164 [ CAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTA ] [+] EMBL BI502975 [ CAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_578#0 TACATCCAAATGAATAGATCGCAAATGTCTGTTAATTGTTGATACAAACAAATACTTGAA 60 consensus_578#1 ------------------------------------------------------------ consensus_578#0 TTCGTCTTTGATGTTGTATCTCACCATTCTTTACTGATTATTGTCCCATCTGATATAGGT 120 consensus_578#1 -----------TGATTGATTGAACTATTCTATG--------TATTCTATGTAAAAGAAA- 40 ** * ** ** ***** * * * * ** * * * * consensus_578#0 CGAAACCTACGACATCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGT 180 consensus_578#1 -AAAGTTTAT-ATACCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGT 98 ** ** * * ********************************************* consensus_578#0 GGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCA 240 consensus_578#1 GGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCA 158 ************************************************************ consensus_578#0 GTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAAT 300 consensus_578#1 GTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAAT 218 ************************************************************ consensus_578#0 AACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGA 360 consensus_578#1 AACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGA 278 ************************************************************ consensus_578#0 CTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCA 420 consensus_578#1 CTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCA 338 ************************************************************ consensus_578#0 GTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCA 480 consensus_578#1 GTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCA 398 ************************************************************ consensus_578#0 GGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTG--------------- 525 consensus_578#1 GGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTGCCTTTGACAGCTAAA 458 ********************************************* consensus_578#0 ------------------------ consensus_578#1 ATTTGGCAATATTAGTATCGCTAA 482 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |