These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_58#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1938 fasta sequence [GAACGTATAAGTTTGAGAATTTCAGTGTCTGCTCTATTCGTTGACTTACTTCTCATTAAATTTGATTTTAATTTCAAGAATTTTAAAAAGCCTGCCAAAATGGTATGGGTTACCGTCTATGATAAGATGGTTTCCGGAAAAACGATCTCTCATGCATTATATGCTCAAACCCAACTAGATCATGTGTGTGCTCTGGATATCGATGCTCCTATAGGAGCTGTCCGTCTTTCAGGGATTATTTGTACAATTGGACCAGCTTCAAGATCTATTGATATGCTTGAAAAAATGATCGATACGGGTATGAACATTGCTAGATTAAATTTCTCGCACGGAACTCATGAATATCATGCTGAGACTATTGCTAATGTGCGACAAGCACAGAAAAACGTTTCCTCTAAAGCTGGATTAAGCATTCCTGTAGGAATTGCTCTTGATACTAAAGGTCCTGAAATCCGTACTGGACTTTTAGAAGGTGGTGGAGCTGCTGAAGTCGAATTAAAAAAAGATCAACTTTTTAAATTGTCTACTGATAAAGCATATGCAGAAAAAGGCACTTCAAGTATTGTTTATGTTGATTATGAGAATATTACTAAAGTTTTGAAGCCTAATAGTCGCGTTTTTGTCGATGATGGTTTAATTTCCCTTAAAGTTACTGCCATCCATCCTGAATTAGTTGTAACTGTTGTTGAAAATGGTGGGATGTTGGGTTCTCGTAAAGGTGTCAATCTACCAGGTACTCCTGTAGATTTACCTGCTGTTTCTGAAAAAGATAAGTCTGATTTAATATTCGGTGTTGAACATGAAGTTGATATGATTTTTGCCTCGTTTATACGAGATGCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAGGAAAAAATATTAAAGTAATATCTAAAATTGAAAATCATCAGGGCGTAGTAAATATTGATGAAATTATTGATGCTTCTGATGGTATTATGGTAGCACGTGGTGATCTTGGTATTGAAATACCACCAGAGAAAGTATTCTTAGCTCAAAAATCTGCTATTAGCAAATGTAATAAAGTTGGAAAACCAATAATTTGTGCTACACAAATGCTTGAATCTATGGTGAAAAAACCACGTGCAACCAGAGCTGAATCATCTGATGTAGCTAATGCTATTCTTGATGGAGCAGATTGTGTTATGTTATCAGGAGAAACTGCTAAAGGAGATTATCCATTGGAATGTGTACTCACAATGGCTAATATTTGTAAAGAAGCAGAGTCTGCAATCTGGCAAACACAATTATTTCACGAGCTTTCAATGAAAGCAATACCTCCAATTGATGCTACACATGCCGTAGCGATTGCTGTTGTAGAAGCATCTGTGAAATGTTTAGCTAGTGCTATTATAGTAATTACAACTACCGGCCATTCCGCGTATTTAATTTCTAAATACAGACCACGTTGCCCAATTATTACAGTTACTAGACACTCCCAGACTGCACGACAATCACATCTTTATCGTGGGATTTTGCCACTTCACTTTGAAGAACCACGATTAGCTGATTGGGTAAAAGATGTTGATGTACGTGTTCAGTTTGGTATGAAATTTGGCAAAAATCAAGGTTTCATTAAACCTGGAGATGCAGTTATAGTAGTCACTGGATGGAGAAAAGGCGCCGGATTTACGAACTCACTTCGTATTGTGACGGTCGAATAAATATACACTGGATTATAAAGGATTCAAAATATTTGATAAATTTAGATTTTGAAAATTCAATATATAATTAATATTGTATAACAGTGTATGATATACATAGTAAAATCATTGAAAGCGTAACAATTTAAAAATATATCAGTAGCTACAGTATTATCGTCATTATAATAACAAGTACCTCGATAAATACAGCATACCAAAATATACATATGTATGTACATACATATGTATAAATGTATATTCATACAT] [+] EMBL BI510983 [GAACGTATAAGTTTGAGAATTTCAGTGTCTGCTCTATTCGTTGACTTACTTCTCATTAAATTTGATTTTAATTTCAAGAATTTTAAAAAGCCTGCCAAAATGGTATGGGTTACCGTCTATGATAAGATGGTTTCCGGAAAAACGATCTCTCATGCATTATATGCTCAAACCCAACTAGATCATGTGTGTGCTCTGGATATCGATGCTCCTATAGGAGCTGTCCGTCTTTCAGGGATTATTTGTACAATTGGACCAGCTTCAAGATCTATTGATATGCTTGAAAAAATGATCGATACGGGTATGAACATTGCTAGATTAAATTTCTCGCACGGAACTCATGAATATCATGCTGAGACTATTGCTAATGTGCGACAAGCACAGAAAAACGTTTCCTCTAAAGCTG ] [-] EMBL BI512755 [ CTTGAAAAAATGATCGATACGGGTATGAACATTGCTAGATTAAATTTCTCGCACGGAACTCATGAATATCATGCTGAGACTATTGCTAATGTGCGACAAGCACAGAAAAACGTTTCCTCTAAAGCTGGATTAAGCATTCCTGTAGGAATTGCTCTTGATACTAAAGGTCCTGAAATCCGTACTGGACTTTTAGAAGGTGGTGGAGCTGCTGAAGTCGAATTAAAAAAAGATCAACTTTTTAAATTGTCTACTGATAAAGCATATGCAGAAAAAGGCACTTCAAGTATTGTTTATGTTGATTATGAGAATATTACTAAAGTTTTGAAGCCTAATAGTCGCGTTTTTGTCGATGATGGTTTAATTTCCCTTAAAGTTACTGCCATCCATCCTGAATTAGTTGTAACTGTTGTTGAAAATGGTGGGATGTTGGGTTCTCGTAAAGGTGTCAATCTACCAGGTACTCCTGTAGATTTACCTGCTGTTTCTGAAAAAGATAAGTCTGATTTAATATTCGGTGTTGAACATGAAGTTG ] [+] EMBL BI512742 [ TAGTCGCGTTTTTGTCGATGATGGTTTAATTTCCCTTAAAGTTACTGCCATCCATCCTGAATTAGTTGTAACTGTTGTTGAAAATGGTGGGATGTTGGGTTCTCGTAAAGGTGTCAATCTACCAGGTACTCCTGTAGATTTACCTGCTGTTTCTGAAAAAGATAAGTCTGATTTAATATTCGGTGTTGAACATGAAGTTGATATGATTTTTGCCTCGTTTATACGAGATGCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAGGAAAAAATATTAAAGTAATATCTAAAATTGAAAATCATCAGGGCGTAGTAAATATTGATGAAATTATTGATGCTTCTGATGGTATTATGGTAGCACGTGGTGATCTTGGTATTGAAATACCACCAGAGAAAGTATTCTTAGCTCAAAAATCTGCTATTAGCAAATGTAATAAAGTTGGAAAACCAATAATTTGTGCTACACAAATGCTTGAATCTATGG ] [+] EMBL BI511539 [ CTGTAGATTTACCTGCTGTTTCTGAAAAAGATAAGTCTGATTTAATATTCGGTGTTGAACATGAAGTTGATATGATTTTTGCCTCGTTTATACGAGATGCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAGGAAAAAATATTAAAGTAATATCTAAAATTGAAAATCATCAGGGCGTAGTAAATATTGATGAAATTATTGATGCTTCTGATGGTATTATGGTAGCACGTGGTGATCTTGGTATTGAAATACCACCAGAGAAAGTATTCTTAGCTCAAAAATCTGCTATTAGCAAATGTAATAAAGTTGGAAAACCAATAATTTGTGCTACACAAATGCTTGAATCTATGGTGAAAAAACCACGTGCAACCAGAGCTGAATCATCTGATGTAGCTAATGCTATTCTTGATGGAGCAGATTGTGTTATGTTATCAGGAGAAACTGCTAAAGGAGATTATCCATTGGAATGTGTACTCACAATGG ] [+] EMBL BI511269 [ TAATAAAGTTGGAAAACCAATAATTTGTGCTACACAAATGCTTGAATCTATGGTGAAAAAACCACGTGCAACCAGAGCTGAATCATCTGATGTAGCTAATGCTATTCTTGATGGAGCAGATTGTGTTATGTTATCAGGAGAAACTGCTAAAGGAGATTATCCATTGGAATGTGTACTCACAATGGCTAATATTTGTAAAGAAGCAGAGTCTGCAATCTGGCAATCACAATTATTTCACGAGCTTTCAATGAAAGCAATACCTCCAATTGATGCTACACATGCCGTAGCGATTGCTGTTGTAGAAGCATCTGTGAAATGTTTAGCTAGTGCTATTATAGTAATTACAACTACCGGCCATTCCGCGTATTTAATTTCTAAATACAGACCACGTTGCCCAATTATTACAGTTACTAGACACTCCCAGACTGCACGACAATCACATCTTTATCGTGGGATTT ] [+] EMBL BI511154 [ AATGGCTAATATTTGTAAAGAAGCAGAGTCTGCAATCTGGCAAACACAATTATTTCACGAGCTTTCAATGAAAGCAATACCTCCAATTGATGCTACACATGCCGTAGCGATTGCTGTTGTAGAAGCATCTGTGAAATGTTTAGCTAGTGCTATTATAGTAATTACAACTACCGGCCATTCCGCGTATTTAATTTCTAAATACAGACCACGTTGCCCAATTATTACAGTTACTAGACACTCCCAGACTGCACGACAATCACATCTTTATCGTGGGATTTTGCCACTTCACTTTGAAGAACCACGATTAGCTGATTGGGTAAAAGATGTTGATGTACGTGTTCAGTTTGGTATGAAATTTGGCAAAAATCAANNTTTCATTAAACCTGGAGATGCAGTTATAGTAGTCACTGGATGGAGAAAAGGCGCCGGATTTACGAACTCACTTCGTATTGTGACGGTCGAATAAATATACACTGGATTATAAAGGA ] [+] EMBL BI512260 [ GCATCTGTGAAATGTTTAGCTAGTGCTATTATAGTAATTACAACTACCGGCCATTCCGCGTATTTAATTTCTAAATACAGACCACGTTGCCCAATTATTACAGTTACTAGACACTCCCAGACTGCACGACAATCACATCTTTATCGTGGGATTTTGCCACTTCACTTTGAAGAACCACGATTAGCTGATTGGGTAAAAGATGTTGATGTACGTGTTCAGTTTGGTATGAAATTTGGCAAAAATCAAGGTTTCATTAAACCTGGAGATGCAGTTATAGTAGTCACTGGATGGAGAAAAGGCGCCGGATTTACGAACTCACTTCGTATTGTGACGGTCGAATAAATATACACTGGATTATAAAGGATTCAAAATATTTGATAAATTTAGATTTTGAAAATTCAATATATAATTAATATTGTATAACAGTGTATGATATACATAGTAAAATCATTGAAAGCGTAACAAT ] [+] EMBL BI510186 [ GCATCTGTGAAATGTTTAGCTAGTGCTATTATAGTAATTACAACTACCGGCCATTCCGCGTATTTAATTTCTAAATACAGACCACGTTGCCCAATTATTACAGTTACTAGACACTCCCAGACTGCACGACAATCACATCTTTATCGTGGGATTTTGCCACTTCACTTTGAAGAACCACGATTAGCTGATTGGGTAAAAGATGTTGATGTACGTGTTCAGTTTGGTATGAAATTTGGCAAAAATCAAGGTTTCATTAAACCTGGAGATGCAGTTATAGTAGTCACTGGATGGAGAAAAGGCGCCGGATTTACGAACTCACTTCGTATTGTGACGGTCGAATAAATATACACTGGATTATAAAGGATTCAAAATATTTGATAAATTTAGATTTTGAAAATTCAATATATAATTAATATTGTATAACAGTGTATGATATACATAGTAAAATCATTGAAAGCGTAACAATTTAAAAATATATCAGTAGCTACAGTATTATCGTCATTATAATAACAAGTACCTCGATAAATACAGCATACCAAAATATACATATGTATGTACATACATATGTATAAATGTATATTCATACAT] consensusID : consensus_58#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [AATTTACTTATAATCGTTCGATAATTTTTCAGATTCATCTCCGCAAAAAGACGGCAATTAAAAACTGGATATTATTAGTAAACGCTTGTAAAACGGCAGTTCCGGAAGTAGTGACATTAAAGATTGCGGTCGCTTCCGTGCCGCTTATGCGAAACATATTGCTCTATCTAATGCGTGACCTTTGTCATAAAGCGGAATATTGGAAAGTTTGCGCTTAGTGATTGTTATGCAATACTGTAGAACCGATGAAGAAAGAATGAAATTCAACGAAATAGAAATATAACCTTCTTCAGGTTCCGTCCTGTAATCTAATTTATCAAGGTCAATGTTGGTTAACAATATTCGAATTGTGACAATTCGAAAAAAAAAAATGTGTGTGATTTTCTAACGAGACAATTTTTTTTTCTTTTTTTTTTAAATAAATTAAATTTCAAACGATAAAATAATTTCCTCAAAATATTCCTCGTTTATACGAGATGCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAAAA] [+] EMBL BI507619 [AATTTACTTATAATCGTTCGATAATTTTTCAGATTCATCTCCGCAAAAAGACGGCAATTAAAAACTGGATATTATTAGTAAACGCTTGTAAAACGGCAGTTCCGGAAGTAGTGACATTAAAGATTGCGGTCGCTTCCGTGCCGCTTATGCGAAACATATTGCTCTATCTAATGCGTGACCTTTGTCATAAAGCGGAATATTGGAAAGTTTGCGCTTAGTGATTGTTATGCAATACTGTAGAACCGATGAAGAAAGAATGAAATTCAACGAAATAGAAATATAACCTTCTTCAGGTTCCGTCCTGTAATCTAATTTATCAAGGTCAATGTTGGTTAACAATATTCGAATTGTGACAATTCGAAAAAAAAAAATGTGTGTGATTTTCTAACGAGACAATTTTTTTTTCTTTTTTTTTTAAATAAATTAAATTTCAAACGATAAAATAATTTCCTCAAAATATTCCTCGTTTATACGAGATGCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_58#0 GAACGTATAAGTTTGAGAATTTCAGTGTCTGCTCTATTCGTTGACTTACTTCTCATTAAA 60 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TTTGATTTTAATTTCAAGAATTTTAAAAAGCCTGCCAAAATGGTATGGGTTACCGTCTAT 120 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GATAAGATGGTTTCCGGAAAAACGATCTCTCATGCATTATATGCTCAAACCCAACTAGAT 180 consensus_58#1 ------------------------------------------------------------ consensus_58#0 CATGTGTGTGCTCTGGATATCGATGCTCCTATAGGAGCTGTCCGTCTTTCAGGGATTATT 240 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TGTACAATTGGACCAGCTTCAAGATCTATTGATATGCTTGAAAAAATGATCGATACGGGT 300 consensus_58#1 ------------------------------------------------------------ consensus_58#0 ATGAACATTGCTAGATTAAATTTCTCGCACGGAACTCATGAATATCATGCTGAGACTATT 360 consensus_58#1 --------------------------------AATTTACTTATAATCGTTCGATAATTTT 28 ** * * *** ** * * ** consensus_58#0 GCTAATGTGCGACAAGCACAGAAAAACGTTTCCTCTAAAGCTGGATTAAGCATTCCTGTA 420 consensus_58#1 TCAGATTCATCTC---CGCAAAAAGACGGCAA-TTAAAAACTGGAT--ATTATT-----A 77 * ** * * ** *** *** * *** ****** * *** * consensus_58#0 GGAATTGCTCTTGATACTAAAGGTCCTGAAATCCGTACTGGACTTTTAGAAGGTGGTGGA 480 consensus_58#1 GTAAACGCTTGTAAAACGGCAGTTCCGGAA----GTAGTGACATTAAAGATTGCGGTCGC 133 * ** *** * * ** ** *** *** *** ** ** *** * *** * consensus_58#0 GCTGCTGAAGTCGAATTAAAAAAAGATCAACTTTTTAAATTGTCTACTGATAAAGCATAT 540 consensus_58#1 TTCCGTGCCGCTTATGCGAAACATATTGCTCTATCTAATGCGTGACCTTTGTCATAAAGC 193 ** * * *** * * ** * *** ** ** * * consensus_58#0 GCAGAAAAAGGCACTTCAAGTATTGTTTATGTTGATTATGAGAATATTACTAAAGTTTTG 600 consensus_58#1 GGAATATTGGAAAGTTTGCGC----TTAGTGATTGTTATGC-AATACTGTAGAACCGATG 248 * * * * * ** * ** ** * ***** **** * ** ** consensus_58#0 AAGCCTAATAGTCGCGTTTTTGTCGATGATGGTTTAATTTCCCTTAAAGTTACTGCCATC 660 consensus_58#1 AAG--AAAGAATGAAATTCAACGAAATAGAAATATAACCTTCTTCAGGTT--CCGTCCTG 304 *** ** * * ** ** * *** * * * * * * * * * consensus_58#0 CATCCTGAATTAGTT--GTAACTGTTG-TTGAAAATGGTGGGATGTTGGGTTCTCGTAAA 717 consensus_58#1 TAATCTAATTTATCAAGGTCAATGTTGGTTAACAATATTCGAATTGTGACAATTCG-AAA 363 * ** * *** ** * ***** ** * *** * * ** ** *** *** consensus_58#0 GGTGTCAATCTACCAGGTACTCCTGTAGATTTACCTGCTGTTTCTGAAAAAGATAAGTCT 777 consensus_58#1 AAAAAAAATGTGTGTGAT-TTTCTAACGAGACAATTTTTTTTTCTTTTTTTTTTAAATA- 421 *** * * * * ** ** * * * ***** *** * consensus_58#0 GATTTAATATTCGGTGTTGAACATGAAGTTGATATGATTTTTGCCTCGTTTATACGAGAT 837 consensus_58#1 AATTAAATTTCAAACGATAAA-ATAATTTCCTCAAAATATT--CCTCGTTTATACGAGAT 478 *** *** * * * ** ** * * * ** ** ***************** consensus_58#0 GCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAGGAAAAAATATTAAAGTA 897 consensus_58#1 GCACACGCTTTGACAGAAATTCGAACAATTCTTGGTGAAAAAAAA--------------- 523 ****************************************** * consensus_58#0 ATATCTAAAATTGAAAATCATCAGGGCGTAGTAAATATTGATGAAATTATTGATGCTTCT 957 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GATGGTATTATGGTAGCACGTGGTGATCTTGGTATTGAAATACCACCAGAGAAAGTATTC 1017 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TTAGCTCAAAAATCTGCTATTAGCAAATGTAATAAAGTTGGAAAACCAATAATTTGTGCT 1077 consensus_58#1 ------------------------------------------------------------ consensus_58#0 ACACAAATGCTTGAATCTATGGTGAAAAAACCACGTGCAACCAGAGCTGAATCATCTGAT 1137 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GTAGCTAATGCTATTCTTGATGGAGCAGATTGTGTTATGTTATCAGGAGAAACTGCTAAA 1197 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GGAGATTATCCATTGGAATGTGTACTCACAATGGCTAATATTTGTAAAGAAGCAGAGTCT 1257 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GCAATCTGGCAAACACAATTATTTCACGAGCTTTCAATGAAAGCAATACCTCCAATTGAT 1317 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GCTACACATGCCGTAGCGATTGCTGTTGTAGAAGCATCTGTGAAATGTTTAGCTAGTGCT 1377 consensus_58#1 ------------------------------------------------------------ consensus_58#0 ATTATAGTAATTACAACTACCGGCCATTCCGCGTATTTAATTTCTAAATACAGACCACGT 1437 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TGCCCAATTATTACAGTTACTAGACACTCCCAGACTGCACGACAATCACATCTTTATCGT 1497 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GGGATTTTGCCACTTCACTTTGAAGAACCACGATTAGCTGATTGGGTAAAAGATGTTGAT 1557 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GTACGTGTTCAGTTTGGTATGAAATTTGGCAAAAATCAAGGTTTCATTAAACCTGGAGAT 1617 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GCAGTTATAGTAGTCACTGGATGGAGAAAAGGCGCCGGATTTACGAACTCACTTCGTATT 1677 consensus_58#1 ------------------------------------------------------------ consensus_58#0 GTGACGGTCGAATAAATATACACTGGATTATAAAGGATTCAAAATATTTGATAAATTTAG 1737 consensus_58#1 ------------------------------------------------------------ consensus_58#0 ATTTTGAAAATTCAATATATAATTAATATTGTATAACAGTGTATGATATACATAGTAAAA 1797 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TCATTGAAAGCGTAACAATTTAAAAATATATCAGTAGCTACAGTATTATCGTCATTATAA 1857 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TAACAAGTACCTCGATAAATACAGCATACCAAAATATACATATGTATGTACATACATATG 1917 consensus_58#1 ------------------------------------------------------------ consensus_58#0 TATAAATGTATATTCATACAT 1938 consensus_58#1 --------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |